Gene name: RIF1
Reference locus (S288C): YBR275C
Gene biotype: protein_coding
Description: Telomere length regulator protein RIF1; Protein that binds to the Rap1p C-terminus; acts synergistically with Rif2p to help control telomere length and establish telomeric silencing; involved in control of DNA replication; contributes to resection of DNA double strand breaks (DSBs); deletion results in telomere elongation; Belongs to the RIF1 family
Top 10 interactors (score): RAP1 (0.999); RIF2 (0.998); CDC13 (0.977); YKU70 (0.962); STN1 (0.962); TEN1 (0.96); GLC7 (0.906); CDC7 (0.881); SIR4 (0.88); TEL1 (0.869); EST1 (0.861); SIR3 (0.84); EXO1 (0.84); RAD9 (0.829); MRE11 (0.82); YKU80 (0.783); SIR2 (0.762); TBF1 (0.753); PIF1 (0.744); EST3 (0.713)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:735635-741385:- | gene-YBR275C_AKU4011 | rna-NM_001178623.4_AKU4011 | cds-NP_009834.4_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:106653-112403:- | gene-YBR275C_BG1 | rna-NM_001178623.4_BG1 | cds-NP_009834.4_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:736792-742542:- | gene-YBR275C_Bruggeman | rna-NM_001178623.4_Bruggeman | cds-NP_009834.4_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:740519-746269:- | gene-YBR275C_CAT1 | rna-NM_001178623.4_CAT1 | cds-NP_009834.4_CAT1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:727201-732951:- | gene-YBR275C_CBS1585 | rna-NM_001178623.4_CBS1585 | cds-NP_009834.4_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:733640-739390:- | gene-YBR275C_CBS436 | rna-NM_001178623.4_CBS436 | cds-NP_009834.4_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:821816-827566:- | gene-YBR275C_CBS6412 | rna-NM_001178623.4_CBS6412 | cds-NP_009834.4_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:733249-738999:- | gene-YBR275C_CBS6413 | rna-NM_001178623.4_CBS6413 | cds-NP_009834.4_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:745256-751006:- | gene-YBR275C_CENPK1137D | rna-NM_001178623.4_CENPK1137D | cds-NP_009834.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:858670-864420:- | gene-YBR275C_EthanolRed | rna-NM_001178623.4_EthanolRed | cds-NP_009834.4_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:752017-757767:- | gene-YBR275C_FaliES1 | rna-NM_001178623.4_FaliES1 | cds-NP_009834.4_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:46297-52047:+ | gene-YBR275C_JAY291 | rna-NM_001178623.4_JAY291 | cds-NP_009834.4_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:738835-744585:- | gene-YBR275C_MUCL30387 | rna-NM_001178623.4_MUCL30387 | cds-NP_009834.4_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:755917-761667:- | gene-YBR275C_MUCL30388 | rna-NM_001178623.4_MUCL30388 | cds-NP_009834.4_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:725508-731258:- | gene-YBR275C_MUCL39482 | rna-NM_001178623.4_MUCL39482 | cds-NP_009834.4_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:735373-741123:- | gene-YBR275C_MUCL42920 | rna-NM_001178623.4_MUCL42920 | cds-NP_009834.4_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:751153-756903:- | gene-YBR275C_NCIM3186 | rna-NM_001178623.4_NCIM3186 | cds-NP_009834.4_NCIM3186 | 97.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:727397-733147:- | gene-YBR275C_NCYC1407 | rna-NM_001178623.4_NCYC1407 | cds-NP_009834.4_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:750520-756270:- | gene-YBR275C_PE2H3 | rna-NM_001178623.4_PE2H3 | cds-NP_009834.4_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:748196-753946:- | gene-YBR275C_PE2H4 | rna-NM_001178623.4_PE2H4 | cds-NP_009834.4_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:751356-757106:- | gene-YBR275C_S288C | rna-NM_001178623.4_S288C | cds-NP_009834.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:106475-112225:- | gene-YBR275C_SA1 | rna-NM_001178623.4_SA1 | cds-NP_009834.4_SA1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:751009-756759:- | gene-YBR275C_ThermosaccDry | rna-NM_001178623.4_ThermosaccDry | cds-NP_009834.4_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:731218-736968:- | gene-YBR275C_VR1 | rna-NM_001178623.4_VR1 | cds-NP_009834.4_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:723854-729603:- | gene-YBR275C_ZTW1 | rna-NM_001178623.4_ZTW1 | cds-NP_009834.4_ZTW1 | 99.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:767768-773536:- | gene-YBR275C_Sparadoxus | rna-NM_001178623.4_Sparadoxus | cds-NP_009834.4_Sparadoxus | 84.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |