Gene name: RIE1
Reference locus (S288C): YGR250C
Gene biotype: protein_coding
Description: Uncharacterized RNA-binding protein YGR250C; Putative RNA binding protein; localizes to stress granules induced by glucose deprivation; interacts with Rbg1p in a two-hybrid assay; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): SGN1 (0.957); RNA14 (0.907); CFT2 (0.812); CFT1 (0.81); YTH1 (0.799); PBP1 (0.786); CDC33 (0.766); MGA1 (0.755); NGR1 (0.749); CBC2 (0.747); NRP1 (0.728); YNL234W (0.725); YPL257W (0.715); MSL1 (0.7); VPS70 (0.699); RBG1 (0.698); GIR2 (0.697); COS9 (0.692); YSH1 (0.68); SYC1 (0.68)
Homologues (species, bitscore): PABPC1 (Homo sapiens, 70.5); Pabpc1 (Mus musculus, 72.0); pabpc1l (Danio rerio, 68.9); pabpc1 (Xenopus tropicalis, 68.2); CstF-64 (Drosophila melanogaster, 62.4); cpf-2 (Caenorhabditis elegans, 62.4); PAB8 (Arabidopsis thaliana, 75.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:956602-958947:- | gene-YGR250C_AKU4011 | rna-NM_001181379.3_AKU4011 | cds-NP_011766.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:236773-239118:- | gene-YGR250C_BG1 | rna-NM_001181379.3_BG1 | cds-NP_011766.3_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:965120-967465:- | gene-YGR250C_Bruggeman | rna-NM_001181379.3_Bruggeman | cds-NP_011766.3_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:964057-966402:- | gene-YGR250C_CAT1 | rna-NM_001181379.3_CAT1 | cds-NP_011766.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:959473-961818:- | gene-YGR250C_CBS1585 | rna-NM_001181379.3_CBS1585 | cds-NP_011766.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:963102-965447:- | gene-YGR250C_CBS436 | rna-NM_001181379.3_CBS436 | cds-NP_011766.3_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:950362-952707:- | gene-YGR250C_CBS6412 | rna-NM_001181379.3_CBS6412 | cds-NP_011766.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:956417-958762:- | gene-YGR250C_CBS6413 | rna-NM_001181379.3_CBS6413 | cds-NP_011766.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:990858-993203:- | gene-YGR250C_CENPK1137D | rna-NM_001181379.3_CENPK1137D | cds-NP_011766.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:944456-946801:- | gene-YGR250C_EthanolRed | rna-NM_001181379.3_EthanolRed | cds-NP_011766.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:949262-951607:- | gene-YGR250C_FaliES1 | rna-NM_001181379.3_FaliES1 | cds-NP_011766.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000076.1:78707-81052:+ | gene-YGR250C_JAY291 | rna-NM_001181379.3_JAY291 | cds-NP_011766.3_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:962854-965199:- | gene-YGR250C_MUCL30387 | rna-NM_001181379.3_MUCL30387 | cds-NP_011766.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:960990-963335:- | gene-YGR250C_MUCL30388 | rna-NM_001181379.3_MUCL30388 | cds-NP_011766.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:954578-956923:- | gene-YGR250C_MUCL39482 | rna-NM_001181379.3_MUCL39482 | cds-NP_011766.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:972454-974799:- | gene-YGR250C_MUCL42920 | rna-NM_001181379.3_MUCL42920 | cds-NP_011766.3_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:991176-993521:- | gene-YGR250C_NCIM3186 | rna-NM_001181379.3_NCIM3186 | cds-NP_011766.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:950209-952554:- | gene-YGR250C_NCYC1407 | rna-NM_001181379.3_NCYC1407 | cds-NP_011766.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:975397-977742:- | gene-YGR250C_PE2H3 | rna-NM_001181379.3_PE2H3 | cds-NP_011766.3_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:980236-982581:- | gene-YGR250C_PE2H4 | rna-NM_001181379.3_PE2H4 | cds-NP_011766.3_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:991176-993521:- | gene-YGR250C_S288C | rna-NM_001181379.3_S288C | cds-NP_011766.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000045.1:7894-10239:+ | gene-YGR250C_SA1 | rna-NM_001181379.3_SA1 | cds-NP_011766.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:969782-972127:- | gene-YGR250C_ThermosaccDry | rna-NM_001181379.3_ThermosaccDry | cds-NP_011766.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1075558-1077903:- | gene-YGR250C_VR1 | rna-NM_001181379.3_VR1 | cds-NP_011766.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:271192-273537:- | gene-YGR250C_ZTW1 | rna-NM_001181379.3_ZTW1 | cds-NP_011766.3_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:961845-964187:- | gene-YGR250C_Sparadoxus | rna-NM_001181379.3_Sparadoxus | cds-NP_011766.3_Sparadoxus | 89.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |