RIC1 (YLR039C)


Gene profile

Gene name: RIC1
Reference locus (S288C): YLR039C
Gene biotype: protein_coding

Description: Guanine nucleotide exchange factor subunit RIC1; Protein involved in retrograde transport to the cis-Golgi network; forms heterodimer with Rgp1p that acts as a GTP exchange factor for Ypt6p; involved in transcription of rRNA and ribosomal protein genes

Top 10 interactors (score): RGP1 (0.997); YPT6 (0.989); LAS21 (0.928); MRS6 (0.904); GDI1 (0.901); GCN3 (0.9); GCD6 (0.9); GCD1 (0.9); GCD2 (0.9); GCD7 (0.9); COG8 (0.896); FUI1 (0.866); SYS1 (0.854); KTR4 (0.849); PMA2 (0.826); TRS85 (0.818); COG6 (0.782); VPS29 (0.769); TRS130 (0.737); TRS31 (0.7)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005306.1:207914-211084:- gene-YLR039C_AKU4011 rna-NM_001181926.1_AKU4011 cds-NP_013140.1_AKU4011 99.1 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000212.1:171059-174229:- gene-YLR039C_BG1 rna-NM_001181926.1_BG1 cds-NP_013140.1_BG1 99.7 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005514.1:217822-220992:- gene-YLR039C_Bruggeman rna-NM_001181926.1_Bruggeman cds-NP_013140.1_Bruggeman 99.7 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005530.1:218148-221318:- gene-YLR039C_CAT1 rna-NM_001181926.1_CAT1 cds-NP_013140.1_CAT1 99.8 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005370.1:215052-218222:- gene-YLR039C_CBS1585 rna-NM_001181926.1_CBS1585 cds-NP_013140.1_CBS1585 99.1 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005354.1:205686-208856:- gene-YLR039C_CBS436 rna-NM_001181926.1_CBS436 cds-NP_013140.1_CBS436 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005338.1:213461-216631:- gene-YLR039C_CBS6412 rna-NM_001181926.1_CBS6412 cds-NP_013140.1_CBS6412 99.0 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005322.1:215313-218483:- gene-YLR039C_CBS6413 rna-NM_001181926.1_CBS6413 cds-NP_013140.1_CBS6413 99.1 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001533.1:204722-207892:- gene-YLR039C_CENPK1137D rna-NM_001181926.1_CENPK1137D cds-NP_013140.1_CENPK1137D 99.0 100.0 Verified 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005482.1:207438-210608:- gene-YLR039C_EthanolRed rna-NM_001181926.1_EthanolRed cds-NP_013140.1_EthanolRed 99.1 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005546.1:207324-210494:- gene-YLR039C_FaliES1 rna-NM_001181926.1_FaliES1 cds-NP_013140.1_FaliES1 99.1 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000289.1:5078-8248:+ gene-YLR039C_JAY291 rna-NM_001181926.1_JAY291 cds-NP_013140.1_JAY291 99.9 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005418.1:215175-218345:- gene-YLR039C_MUCL30387 rna-NM_001181926.1_MUCL30387 cds-NP_013140.1_MUCL30387 99.6 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005450.1:222428-226008:- gene-YLR039C_MUCL30388 rna-NM_001181926.1_MUCL30388 cds-NP_013140.1_MUCL30388 87.9 100.0 Unannotated 1 1 0 False False False True False
MUCL39482 GCA_001738235.1 Sake Asia CM005290.1:215547-218717:- gene-YLR039C_MUCL39482 rna-NM_001181926.1_MUCL39482 cds-NP_013140.1_MUCL39482 99.1 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005434.1:215452-218622:- gene-YLR039C_MUCL42920 rna-NM_001181926.1_MUCL42920 cds-NP_013140.1_MUCL42920 99.3 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011821.1:225400-228570:- gene-YLR039C_NCIM3186 rna-NM_001181926.1_NCIM3186 cds-NP_013140.1_NCIM3186 98.7 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005274.1:207606-210776:- gene-YLR039C_NCYC1407 rna-NM_001181926.1_NCYC1407 cds-NP_013140.1_NCYC1407 99.1 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994151.1:213483-216653:- gene-YLR039C_PE2H3 rna-NM_001181926.1_PE2H3 cds-NP_013140.1_PE2H3 99.6 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999883.1:213224-216394:- gene-YLR039C_PE2H4 rna-NM_001181926.1_PE2H4 cds-NP_013140.1_PE2H4 99.6 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001144.5:225426-228596:- gene-YLR039C_S288C rna-NM_001181926.1_S288C cds-NP_013140.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000046.1:51326-54496:- gene-YLR039C_SA1 rna-NM_001181926.1_SA1 cds-NP_013140.1_SA1 99.6 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005498.1:207512-210682:- gene-YLR039C_ThermosaccDry rna-NM_001181926.1_ThermosaccDry cds-NP_013140.1_ThermosaccDry 99.1 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005466.1:220930-224100:- gene-YLR039C_VR1 rna-NM_001181926.1_VR1 cds-NP_013140.1_VR1 99.7 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000023.1:206859-210029:- gene-YLR039C_ZTW1 rna-NM_001181926.1_ZTW1 cds-NP_013140.1_ZTW1 99.6 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047498.1:215741-218915:- gene-YLR039C_Sparadoxus rna-NM_001181926.1_Sparadoxus cds-NP_013140.1_Sparadoxus 89.2 99.8 Unannotated 1 1 0 False False True False False

Additional files