Gene name: RIB4
Reference locus (S288C): YOL143C
Gene biotype: protein_coding
Description: Lumazine synthase (DMRL synthase); catalyzes synthesis of immediate precursor to riboflavin; DMRL synthase stands for 6,7-dimethyl-8-ribityllumazine synthase
Top 10 interactors (score): RIB3 (0.999); RIB5 (0.999); RIB7 (0.997); RIB1 (0.994); FMN1 (0.886); URA1 (0.837); CRN1 (0.821); YEL045C (0.81); RIB2 (0.776); FAD1 (0.763); HOM2 (0.725); JIP5 (0.721); HEM2 (0.68); GDS1 (0.671); THI21 (0.667); THI20 (0.633); YBR056W (0.618); FOL1 (0.613); LEU1 (0.597); YMR315W (0.593)
Homologues (species, bitscore): COS1 (Arabidopsis thaliana, 80.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:43241-43750:- | gene-YOL143C_AKU4011 | rna-NM_001183397.1_AKU4011 | cds-NP_014498.1_AKU4011 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:8897-9406:- | gene-YOL143C_BG1 | rna-NM_001183397.1_BG1 | cds-NP_014498.1_BG1 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:44546-45055:- | gene-YOL143C_Bruggeman | rna-NM_001183397.1_Bruggeman | cds-NP_014498.1_Bruggeman | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:43492-44001:- | gene-YOL143C_CAT1 | rna-NM_001183397.1_CAT1 | cds-NP_014498.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:37735-38244:- | gene-YOL143C_CBS1585 | rna-NM_001183397.1_CBS1585 | cds-NP_014498.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:43590-44099:- | gene-YOL143C_CBS436 | rna-NM_001183397.1_CBS436 | cds-NP_014498.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:37610-38119:- | gene-YOL143C_CBS6412 | rna-NM_001183397.1_CBS6412 | cds-NP_014498.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:44056-44565:- | gene-YOL143C_CBS6413 | rna-NM_001183397.1_CBS6413 | cds-NP_014498.1_CBS6413 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:54493-55002:- | gene-YOL143C_CENPK1137D | rna-NM_001183397.1_CENPK1137D | cds-NP_014498.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:41521-42030:- | gene-YOL143C_EthanolRed | rna-NM_001183397.1_EthanolRed | cds-NP_014498.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:43544-44053:- | gene-YOL143C_FaliES1 | rna-NM_001183397.1_FaliES1 | cds-NP_014498.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000329.1:38494-39003:+ | gene-YOL143C_JAY291 | rna-NM_001183397.1_JAY291 | cds-NP_014498.1_JAY291 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:49167-49676:- | gene-YOL143C_MUCL30387 | rna-NM_001183397.1_MUCL30387 | cds-NP_014498.1_MUCL30387 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:52177-52686:- | gene-YOL143C_MUCL30388 | rna-NM_001183397.1_MUCL30388 | cds-NP_014498.1_MUCL30388 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:45662-46171:- | gene-YOL143C_MUCL39482 | rna-NM_001183397.1_MUCL39482 | cds-NP_014498.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:61572-62081:- | gene-YOL143C_MUCL42920 | rna-NM_001183397.1_MUCL42920 | cds-NP_014498.1_MUCL42920 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:54484-54993:- | gene-YOL143C_NCIM3186 | rna-NM_001183397.1_NCIM3186 | cds-NP_014498.1_NCIM3186 | 98.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:51719-52228:- | gene-YOL143C_NCYC1407 | rna-NM_001183397.1_NCYC1407 | cds-NP_014498.1_NCYC1407 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:30136-30645:- | gene-YOL143C_PE2H3 | rna-NM_001183397.1_PE2H3 | cds-NP_014498.1_PE2H3 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:47084-47593:- | gene-YOL143C_PE2H4 | rna-NM_001183397.1_PE2H4 | cds-NP_014498.1_PE2H4 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:54595-55104:- | gene-YOL143C_S288C | rna-NM_001183397.1_S288C | cds-NP_014498.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:27998-28507:- | gene-YOL143C_SA1 | rna-NM_001183397.1_SA1 | cds-NP_014498.1_SA1 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:42687-43196:- | gene-YOL143C_ThermosaccDry | rna-NM_001183397.1_ThermosaccDry | cds-NP_014498.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:43358-43867:- | gene-YOL143C_VR1 | rna-NM_001183397.1_VR1 | cds-NP_014498.1_VR1 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:42443-42952:- | gene-YOL143C_ZTW1 | rna-NM_001183397.1_ZTW1 | cds-NP_014498.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:44952-45461:- | gene-YOL143C_Sparadoxus | rna-NM_001183397.1_Sparadoxus | cds-NP_014498.1_Sparadoxus | 94.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |