Gene name: RIB3
Reference locus (S288C): YDR487C
Gene biotype: protein_coding
Description: 3,4-dihydroxy-2-butanone-4-phosphate synthase RIB3; 3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase); required for riboflavin biosynthesis from ribulose-5-phosphate, also has an unrelated function in mitochondrial respiration
Top 10 interactors (score): RIB5 (0.999); RIB4 (0.999); RIB1 (0.997); RIB7 (0.992); RIB2 (0.939); FMN1 (0.886); MRPL31 (0.856); MRPL7 (0.813); VPS60 (0.773); FAD1 (0.748); CRN1 (0.745); MDM34 (0.724); MDM10 (0.723); TIM54 (0.718); CET1 (0.705); ERG8 (0.704); MGM101 (0.699); SNM1 (0.699); PUF3 (0.669); AIM29 (0.616)
Homologues (species, bitscore): RIBA2 (Arabidopsis thaliana, 190.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1368284-1368910:- | gene-YDR487C_AKU4011 | rna-NM_001180795.1_AKU4011 | cds-NP_010775.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:9886-10512:- | gene-YDR487C_BG1 | rna-NM_001180795.1_BG1 | cds-NP_010775.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1399688-1400314:- | gene-YDR487C_Bruggeman | rna-NM_001180795.1_Bruggeman | cds-NP_010775.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1376832-1377458:- | gene-YDR487C_CAT1 | rna-NM_001180795.1_CAT1 | cds-NP_010775.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1362583-1363209:- | gene-YDR487C_CBS1585 | rna-NM_001180795.1_CBS1585 | cds-NP_010775.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1381933-1382559:- | gene-YDR487C_CBS436 | rna-NM_001180795.1_CBS436 | cds-NP_010775.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1358207-1358833:- | gene-YDR487C_CBS6412 | rna-NM_001180795.1_CBS6412 | cds-NP_010775.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1381218-1381844:- | gene-YDR487C_CBS6413 | rna-NM_001180795.1_CBS6413 | cds-NP_010775.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1427050-1427676:- | gene-YDR487C_CENPK1137D | rna-NM_001180795.1_CENPK1137D | cds-NP_010775.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1371623-1372249:- | gene-YDR487C_EthanolRed | rna-NM_001180795.1_EthanolRed | cds-NP_010775.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1375176-1375802:- | gene-YDR487C_FaliES1 | rna-NM_001180795.1_FaliES1 | cds-NP_010775.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:73421-74047:- | gene-YDR487C_JAY291 | rna-NM_001180795.1_JAY291 | cds-NP_010775.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1382174-1382800:- | gene-YDR487C_MUCL30387 | rna-NM_001180795.1_MUCL30387 | cds-NP_010775.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1364206-1364832:- | gene-YDR487C_MUCL30388 | rna-NM_001180795.1_MUCL30388 | cds-NP_010775.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1354068-1354694:- | gene-YDR487C_MUCL39482 | rna-NM_001180795.1_MUCL39482 | cds-NP_010775.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1296849-1297475:- | gene-YDR487C_MUCL42920 | rna-NM_001180795.1_MUCL42920 | cds-NP_010775.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1428277-1428903:- | gene-YDR487C_NCIM3186 | rna-NM_001180795.1_NCIM3186 | cds-NP_010775.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1367837-1368463:- | gene-YDR487C_NCYC1407 | rna-NM_001180795.1_NCYC1407 | cds-NP_010775.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1378688-1379314:- | gene-YDR487C_PE2H3 | rna-NM_001180795.1_PE2H3 | cds-NP_010775.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1384262-1384888:- | gene-YDR487C_PE2H4 | rna-NM_001180795.1_PE2H4 | cds-NP_010775.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1428354-1428980:- | gene-YDR487C_S288C | rna-NM_001180795.1_S288C | cds-NP_010775.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:188166-188792:+ | gene-YDR487C_SA1 | rna-NM_001180795.1_SA1 | cds-NP_010775.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1379398-1380024:- | gene-YDR487C_ThermosaccDry | rna-NM_001180795.1_ThermosaccDry | cds-NP_010775.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1395133-1395759:- | gene-YDR487C_VR1 | rna-NM_001180795.1_VR1 | cds-NP_010775.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:422065-422691:- | gene-YDR487C_ZTW1 | rna-NM_001180795.1_ZTW1 | cds-NP_010775.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1382223-1382849:- | gene-YDR487C_Sparadoxus | rna-NM_001180795.1_Sparadoxus | cds-NP_010775.1_Sparadoxus | 91.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |