Gene name: RIB2
Reference locus (S288C): YOL066C
Gene biotype: protein_coding
Description: Bifunctional protein RIB2; Bifunctional DRAP deaminase tRNA:pseudouridine synthase; the deaminase catalyzes the third step in riboflavin biosynthesis and the synthase catalyzes formation of pseudouridine at position 32 in cytoplasmic tRNAs; RIB2 has a paralog, PUS9, that arose from the whole genome duplication
Top 10 interactors (score): RIB7 (0.991); TAD3 (0.977); PUS7 (0.963); PUS2 (0.941); RIB3 (0.939); PUS4 (0.936); RIB5 (0.929); RIB1 (0.918); CDD1 (0.912); PUS1 (0.904); TAD1 (0.891); DEG1 (0.891); DCD1 (0.878); MSS1 (0.861); PUS5 (0.86); ERV1 (0.86); TAD2 (0.858); FCY1 (0.79); RIB4 (0.776); FAD1 (0.77)
Homologues (species, bitscore): RPUSD2 (Homo sapiens, 280.8); Rpusd2 (Mus musculus, 281.6); LOC565088 (Danio rerio, 274.2); rpusd2 (Xenopus tropicalis, 265.4); RluA-2 (Drosophila melanogaster, 274.6); K07E8.7 (Caenorhabditis elegans, 196.8); AT5G51140 (Arabidopsis thaliana, 203.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:186350-188125:- | gene-YOL066C_AKU4011 | rna-NM_001183321.1_AKU4011 | cds-NP_014575.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:2303-4078:- | gene-YOL066C_BG1 | rna-NM_001183321.1_BG1 | cds-NP_014575.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:188020-189795:- | gene-YOL066C_Bruggeman | rna-NM_001183321.1_Bruggeman | cds-NP_014575.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:187532-189307:- | gene-YOL066C_CAT1 | rna-NM_001183321.1_CAT1 | cds-NP_014575.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:180741-182516:- | gene-YOL066C_CBS1585 | rna-NM_001183321.1_CBS1585 | cds-NP_014575.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:185900-187675:- | gene-YOL066C_CBS436 | rna-NM_001183321.1_CBS436 | cds-NP_014575.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:180670-182445:- | gene-YOL066C_CBS6412 | rna-NM_001183321.1_CBS6412 | cds-NP_014575.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:187606-189381:- | gene-YOL066C_CBS6413 | rna-NM_001183321.1_CBS6413 | cds-NP_014575.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:202446-204221:- | gene-YOL066C_CENPK1137D | rna-NM_001183321.1_CENPK1137D | cds-NP_014575.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:183450-185225:- | gene-YOL066C_EthanolRed | rna-NM_001183321.1_EthanolRed | cds-NP_014575.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:185993-187768:- | gene-YOL066C_FaliES1 | rna-NM_001183321.1_FaliES1 | cds-NP_014575.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000018.1:77789-79564:+ | gene-YOL066C_JAY291 | rna-NM_001183321.1_JAY291 | cds-NP_014575.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:191785-193560:- | gene-YOL066C_MUCL30387 | rna-NM_001183321.1_MUCL30387 | cds-NP_014575.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:195469-197244:- | gene-YOL066C_MUCL30388 | rna-NM_001183321.1_MUCL30388 | cds-NP_014575.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:188661-190436:- | gene-YOL066C_MUCL39482 | rna-NM_001183321.1_MUCL39482 | cds-NP_014575.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:204142-205917:- | gene-YOL066C_MUCL42920 | rna-NM_001183321.1_MUCL42920 | cds-NP_014575.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:202585-204360:- | gene-YOL066C_NCIM3186 | rna-NM_001183321.1_NCIM3186 | cds-NP_014575.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:195278-197053:- | gene-YOL066C_NCYC1407 | rna-NM_001183321.1_NCYC1407 | cds-NP_014575.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:178284-180059:- | gene-YOL066C_PE2H3 | rna-NM_001183321.1_PE2H3 | cds-NP_014575.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:189274-191049:- | gene-YOL066C_PE2H4 | rna-NM_001183321.1_PE2H4 | cds-NP_014575.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:202696-204471:- | gene-YOL066C_S288C | rna-NM_001183321.1_S288C | cds-NP_014575.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:170584-172359:- | gene-YOL066C_SA1 | rna-NM_001183321.1_SA1 | cds-NP_014575.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:185001-186776:- | gene-YOL066C_ThermosaccDry | rna-NM_001183321.1_ThermosaccDry | cds-NP_014575.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:185764-187539:- | gene-YOL066C_VR1 | rna-NM_001183321.1_VR1 | cds-NP_014575.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:184645-186420:- | gene-YOL066C_ZTW1 | rna-NM_001183321.1_ZTW1 | cds-NP_014575.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:188181-189956:- | gene-YOL066C_Sparadoxus | rna-NM_001183321.1_Sparadoxus | cds-NP_014575.1_Sparadoxus | 89.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |