Gene name: RIA1
Reference locus (S288C): YNL163C
Gene biotype: protein_coding
Description: Ribosome assembly protein 1; Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis; with Sdo1p, a guanine nucleotide exchange factor (GEF), promotes release of Tif6p from 60S ribosomal subunits in the cytoplasm so that they can assemble with 40S subunits to generate mature ribosomes; required for quality control check of newly made large ribosomal subunits before they are released into the pool of translating ribosomes
Top 10 interactors (score): SDO1 (0.999); TIF6 (0.991); LSG1 (0.957); RPL5 (0.944); RLP24 (0.937); NMD3 (0.936); RPL10 (0.923); REI1 (0.878); RPL25 (0.875); NOG1 (0.872); TEF4 (0.856); CAM1 (0.856); MRT4 (0.856); RPP0 (0.855); ARX1 (0.848); AFG2 (0.829); PRP8 (0.828); RRP12 (0.82); RPS3 (0.817); DIP2 (0.816)
Homologues (species, bitscore): EFTUD1 (Homo sapiens, 778.9); Eftud1 (Mus musculus, 781.6); EFTUD1 (Danio rerio, 808.5); EFTUD1 (Xenopus tropicalis, 760.4); CG33158 (Drosophila melanogaster, 711.8); K10C3.5 (Caenorhabditis elegans, 414.8); AT3G22980 (Arabidopsis thaliana, 632.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:320471-323803:- | gene-YNL163C_AKU4011 | rna-NM_001183001.1_AKU4011 | cds-NP_014236.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:224435-227767:- | gene-YNL163C_BG1 | rna-NM_001183001.1_BG1 | cds-NP_014236.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:330527-333859:- | gene-YNL163C_Bruggeman | rna-NM_001183001.1_Bruggeman | cds-NP_014236.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:373404-376736:- | gene-YNL163C_CAT1 | rna-NM_001183001.1_CAT1 | cds-NP_014236.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:321123-324455:- | gene-YNL163C_CBS1585 | rna-NM_001183001.1_CBS1585 | cds-NP_014236.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:389442-392774:- | gene-YNL163C_CBS436 | rna-NM_001183001.1_CBS436 | cds-NP_014236.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:316528-319860:- | gene-YNL163C_CBS6412 | rna-NM_001183001.1_CBS6412 | cds-NP_014236.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:317556-320888:- | gene-YNL163C_CBS6413 | rna-NM_001183001.1_CBS6413 | cds-NP_014236.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:320555-323887:- | gene-YNL163C_CENPK1137D | rna-NM_001183001.1_CENPK1137D | cds-NP_014236.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:317444-320776:- | gene-YNL163C_EthanolRed | rna-NM_001183001.1_EthanolRed | cds-NP_014236.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:313357-316689:- | gene-YNL163C_FaliES1 | rna-NM_001183001.1_FaliES1 | cds-NP_014236.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000260.1:1811-5143:+ | gene-YNL163C_JAY291 | rna-NM_001183001.1_JAY291 | cds-NP_014236.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:326347-329679:- | gene-YNL163C_MUCL30387 | rna-NM_001183001.1_MUCL30387 | cds-NP_014236.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:360901-364233:- | gene-YNL163C_MUCL30388 | rna-NM_001183001.1_MUCL30388 | cds-NP_014236.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:318362-321694:- | gene-YNL163C_MUCL39482 | rna-NM_001183001.1_MUCL39482 | cds-NP_014236.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:320765-324097:- | gene-YNL163C_MUCL42920 | rna-NM_001183001.1_MUCL42920 | cds-NP_014236.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:326710-330042:- | gene-YNL163C_NCIM3186 | rna-NM_001183001.1_NCIM3186 | cds-NP_014236.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:320456-323788:- | gene-YNL163C_NCYC1407 | rna-NM_001183001.1_NCYC1407 | cds-NP_014236.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:317413-320745:- | gene-YNL163C_PE2H3 | rna-NM_001183001.1_PE2H3 | cds-NP_014236.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:316801-320133:- | gene-YNL163C_PE2H4 | rna-NM_001183001.1_PE2H4 | cds-NP_014236.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:326741-330073:- | gene-YNL163C_S288C | rna-NM_001183001.1_S288C | cds-NP_014236.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:83500-86832:+ | gene-YNL163C_SA1 | rna-NM_001183001.1_SA1 | cds-NP_014236.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:314214-317546:- | gene-YNL163C_ThermosaccDry | rna-NM_001183001.1_ThermosaccDry | cds-NP_014236.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:332736-336068:- | gene-YNL163C_VR1 | rna-NM_001183001.1_VR1 | cds-NP_014236.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:224037-227369:- | gene-YNL163C_ZTW1 | rna-NM_001183001.1_ZTW1 | cds-NP_014236.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:324819-328151:- | gene-YNL163C_Sparadoxus | rna-NM_001183001.1_Sparadoxus | cds-NP_014236.1_Sparadoxus | 90.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |