Gene name: RHO4
Reference locus (S288C): YKR055W
Gene biotype: protein_coding
Description: GTP-binding protein RHO4; Non-essential small GTPase; member of the Rho/Rac subfamily of Ras-like proteins; likely to be involved in the establishment of cell polarity; has long N-terminal extension that plays an important role in Rho4p function and is shared with Rho4 homologs in other yeasts and filamentous fungi
Top 10 interactors (score): RDI1 (0.985); RGD1 (0.977); BZZ1 (0.967); BUD5 (0.962); SAC7 (0.958); ECM25 (0.955); BNR1 (0.948); CDC25 (0.944); BAG7 (0.943); LAS17 (0.91); BUD3 (0.909); FUS2 (0.905); PAN1 (0.9); END3 (0.9); BEM1 (0.888); ROM1 (0.873); BNI1 (0.872); PKC1 (0.866); RGA1 (0.863); RHO3 (0.858)
Homologues (species, bitscore): RHOA (Homo sapiens, 190.7); Rhoa (Mus musculus, 190.7); rhoaa (Danio rerio, 188.7); rhoc (Xenopus tropicalis, 188.0); Rho1 (Drosophila melanogaster, 193.7); rho-1 (Caenorhabditis elegans, 190.7); ROP9 (Arabidopsis thaliana, 185.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:533513-534388:+ | gene-YKR055W_AKU4011 | rna-NM_001179845.3_AKU4011 | cds-NP_012981.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:109138-110013:- | gene-YKR055W_BG1 | rna-NM_001179845.3_BG1 | cds-NP_012981.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:555690-556565:+ | gene-YKR055W_Bruggeman | rna-NM_001179845.3_Bruggeman | cds-NP_012981.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:552114-552989:+ | gene-YKR055W_CAT1 | rna-NM_001179845.3_CAT1 | cds-NP_012981.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:546253-547128:+ | gene-YKR055W_CBS1585 | rna-NM_001179845.3_CBS1585 | cds-NP_012981.3_CBS1585 | 99.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:545085-545960:+ | gene-YKR055W_CBS436 | rna-NM_001179845.3_CBS436 | cds-NP_012981.3_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:530431-531306:+ | gene-YKR055W_CBS6412 | rna-NM_001179845.3_CBS6412 | cds-NP_012981.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:546073-546948:+ | gene-YKR055W_CBS6413 | rna-NM_001179845.3_CBS6413 | cds-NP_012981.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:547872-548747:+ | gene-YKR055W_CENPK1137D | rna-NM_001179845.3_CENPK1137D | cds-NP_012981.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:543834-544709:+ | gene-YKR055W_EthanolRed | rna-NM_001179845.3_EthanolRed | cds-NP_012981.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:546971-547846:+ | gene-YKR055W_FaliES1 | rna-NM_001179845.3_FaliES1 | cds-NP_012981.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000077.1:5955-6830:- | gene-YKR055W_JAY291 | rna-NM_001179845.3_JAY291 | cds-NP_012981.3_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:556088-556963:+ | gene-YKR055W_MUCL30387 | rna-NM_001179845.3_MUCL30387 | cds-NP_012981.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:550450-551325:+ | gene-YKR055W_MUCL30388 | rna-NM_001179845.3_MUCL30388 | cds-NP_012981.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:545581-546456:+ | gene-YKR055W_MUCL39482 | rna-NM_001179845.3_MUCL39482 | cds-NP_012981.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:551604-552479:+ | gene-YKR055W_MUCL42920 | rna-NM_001179845.3_MUCL42920 | cds-NP_012981.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:548205-549080:+ | gene-YKR055W_NCIM3186 | rna-NM_001179845.3_NCIM3186 | cds-NP_012981.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:545795-546670:+ | gene-YKR055W_NCYC1407 | rna-NM_001179845.3_NCYC1407 | cds-NP_012981.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:571161-572036:+ | gene-YKR055W_PE2H3 | rna-NM_001179845.3_PE2H3 | cds-NP_012981.3_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:555556-556431:+ | gene-YKR055W_PE2H4 | rna-NM_001179845.3_PE2H4 | cds-NP_012981.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:548216-549091:+ | gene-YKR055W_S288C | rna-NM_001179845.3_S288C | cds-NP_012981.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000093.1:31317-32192:+ | gene-YKR055W_SA1 | rna-NM_001179845.3_SA1 | cds-NP_012981.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:546210-547085:+ | gene-YKR055W_ThermosaccDry | rna-NM_001179845.3_ThermosaccDry | cds-NP_012981.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:546229-547104:+ | gene-YKR055W_VR1 | rna-NM_001179845.3_VR1 | cds-NP_012981.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:544199-545074:+ | gene-YKR055W_ZTW1 | rna-NM_001179845.3_ZTW1 | cds-NP_012981.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:569566-570441:+ | gene-YKR055W_Sparadoxus | rna-NM_001179845.3_Sparadoxus | cds-NP_012981.3_Sparadoxus | 90.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |