Gene name: RGT1
Reference locus (S288C): YKL038W
Gene biotype: protein_coding
Description: Glucose-responsive transcription factor; regulates expression of several glucose transporter (HXT) genes in response to glucose; binds to promoters and acts both as a transcriptional activator and repressor; recruits Tup1p/Cyc8p to target gene promoters; RGT1 has a paralog, EDS1, that arose from the whole genome duplication; Belongs to the EDS1/RGT1 family
Top 10 interactors (score): CYC8 (0.997); STD1 (0.995); SNF3 (0.98); GRR1 (0.971); RGT2 (0.945); MIG1 (0.944); MTH1 (0.928); HXT1 (0.892); HXT2 (0.859); SNF1 (0.854); HXT4 (0.849); HXK2 (0.834); TUP1 (0.831); HXT3 (0.813); ADR1 (0.787); MED8 (0.771); YCK1 (0.77); MIG2 (0.76); HXT6 (0.745); TPK3 (0.727)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:351615-355127:+ | gene-YKL038W_AKU4011 | rna-NM_001179604.3_AKU4011 | cds-NP_012886.3_AKU4011 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:288858-292370:- | gene-YKL038W_BG1 | rna-NM_001179604.3_BG1 | cds-NP_012886.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:370879-374391:+ | gene-YKL038W_Bruggeman | rna-NM_001179604.3_Bruggeman | cds-NP_012886.3_Bruggeman | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:367069-370581:+ | gene-YKL038W_CAT1 | rna-NM_001179604.3_CAT1 | cds-NP_012886.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:364342-367854:+ | gene-YKL038W_CBS1585 | rna-NM_001179604.3_CBS1585 | cds-NP_012886.3_CBS1585 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:362467-365979:+ | gene-YKL038W_CBS436 | rna-NM_001179604.3_CBS436 | cds-NP_012886.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:348479-351991:+ | gene-YKL038W_CBS6412 | rna-NM_001179604.3_CBS6412 | cds-NP_012886.3_CBS6412 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:364307-367819:+ | gene-YKL038W_CBS6413 | rna-NM_001179604.3_CBS6413 | cds-NP_012886.3_CBS6413 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:365263-368775:+ | gene-YKL038W_CENPK1137D | rna-NM_001179604.3_CENPK1137D | cds-NP_012886.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:362296-365808:+ | gene-YKL038W_EthanolRed | rna-NM_001179604.3_EthanolRed | cds-NP_012886.3_EthanolRed | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:363115-366627:+ | gene-YKL038W_FaliES1 | rna-NM_001179604.3_FaliES1 | cds-NP_012886.3_FaliES1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000080.1:68029-71541:+ | gene-YKL038W_JAY291 | rna-NM_001179604.3_JAY291 | cds-NP_012886.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:371787-375299:+ | gene-YKL038W_MUCL30387 | rna-NM_001179604.3_MUCL30387 | cds-NP_012886.3_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:367419-370931:+ | gene-YKL038W_MUCL30388 | rna-NM_001179604.3_MUCL30388 | cds-NP_012886.3_MUCL30388 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:363638-367150:+ | gene-YKL038W_MUCL39482 | rna-NM_001179604.3_MUCL39482 | cds-NP_012886.3_MUCL39482 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:368496-372008:+ | gene-YKL038W_MUCL42920 | rna-NM_001179604.3_MUCL42920 | cds-NP_012886.3_MUCL42920 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:365594-369106:+ | gene-YKL038W_NCIM3186 | rna-NM_001179604.3_NCIM3186 | cds-NP_012886.3_NCIM3186 | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:363837-367349:+ | gene-YKL038W_NCYC1407 | rna-NM_001179604.3_NCYC1407 | cds-NP_012886.3_NCYC1407 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:388375-391887:+ | gene-YKL038W_PE2H3 | rna-NM_001179604.3_PE2H3 | cds-NP_012886.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:373110-376622:+ | gene-YKL038W_PE2H4 | rna-NM_001179604.3_PE2H4 | cds-NP_012886.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:365605-369117:+ | gene-YKL038W_S288C | rna-NM_001179604.3_S288C | cds-NP_012886.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:43716-47228:+ | gene-YKL038W_SA1 | rna-NM_001179604.3_SA1 | cds-NP_012886.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:364302-367814:+ | gene-YKL038W_ThermosaccDry | rna-NM_001179604.3_ThermosaccDry | cds-NP_012886.3_ThermosaccDry | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:363446-366958:+ | gene-YKL038W_VR1 | rna-NM_001179604.3_VR1 | cds-NP_012886.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:362326-365838:+ | gene-YKL038W_ZTW1 | rna-NM_001179604.3_ZTW1 | cds-NP_012886.3_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:381581-385078:+ | gene-YKL038W_Sparadoxus | rna-NM_001179604.3_Sparadoxus | cds-NP_012886.3_Sparadoxus | 89.4 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |