Gene name: RGR1
Reference locus (S288C): YLR071C
Gene biotype: protein_coding
Description: Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; required for glucose repression, HO repression, RME1 repression and sporulation
Top 10 interactors (score): SRB5 (0.999); MED8 (0.999); NUT2 (0.999); SSN2 (0.999); SIN4 (0.999); GAL11 (0.999); MED6 (0.999); SOH1 (0.999); SRB7 (0.999); SSN3 (0.999); CSE2 (0.999); MED7 (0.999); SRB4 (0.999); SRB2 (0.998); RPO21 (0.998); ROX3 (0.998); SRB6 (0.998); RPB3 (0.997); RPB4 (0.996); PGD1 (0.996)
Homologues (species, bitscore): MED14 (Homo sapiens, 60.8); Med14 (Mus musculus, 62.0); med14 (Danio rerio, 63.9); med14 (Xenopus tropicalis, 62.8); MED14 (Drosophila melanogaster, 62.8); rgr-1 (Caenorhabditis elegans, 78.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:257852-261100:- | gene-YLR071C_AKU4011 | rna-NM_001181958.1_AKU4011 | cds-NP_013172.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:220987-224235:- | gene-YLR071C_BG1 | rna-NM_001181958.1_BG1 | cds-NP_013172.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:267759-271007:- | gene-YLR071C_Bruggeman | rna-NM_001181958.1_Bruggeman | cds-NP_013172.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:268072-271320:- | gene-YLR071C_CAT1 | rna-NM_001181958.1_CAT1 | cds-NP_013172.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:264966-268214:- | gene-YLR071C_CBS1585 | rna-NM_001181958.1_CBS1585 | cds-NP_013172.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:255584-258832:- | gene-YLR071C_CBS436 | rna-NM_001181958.1_CBS436 | cds-NP_013172.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:263404-266652:- | gene-YLR071C_CBS6412 | rna-NM_001181958.1_CBS6412 | cds-NP_013172.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:265237-268485:- | gene-YLR071C_CBS6413 | rna-NM_001181958.1_CBS6413 | cds-NP_013172.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:260400-263648:- | gene-YLR071C_CENPK1137D | rna-NM_001181958.1_CENPK1137D | cds-NP_013172.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:257371-260619:- | gene-YLR071C_EthanolRed | rna-NM_001181958.1_EthanolRed | cds-NP_013172.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:257247-260495:- | gene-YLR071C_FaliES1 | rna-NM_001181958.1_FaliES1 | cds-NP_013172.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:32178-35426:- | gene-YLR071C_JAY291 | rna-NM_001181958.1_JAY291 | cds-NP_013172.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:265125-268373:- | gene-YLR071C_MUCL30387 | rna-NM_001181958.1_MUCL30387 | cds-NP_013172.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:272771-276019:- | gene-YLR071C_MUCL30388 | rna-NM_001181958.1_MUCL30388 | cds-NP_013172.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:265479-268727:- | gene-YLR071C_MUCL39482 | rna-NM_001181958.1_MUCL39482 | cds-NP_013172.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:265398-268646:- | gene-YLR071C_MUCL42920 | rna-NM_001181958.1_MUCL42920 | cds-NP_013172.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:275352-278600:- | gene-YLR071C_NCIM3186 | rna-NM_001181958.1_NCIM3186 | cds-NP_013172.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:257552-260800:- | gene-YLR071C_NCYC1407 | rna-NM_001181958.1_NCYC1407 | cds-NP_013172.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:263415-266663:- | gene-YLR071C_PE2H3 | rna-NM_001181958.1_PE2H3 | cds-NP_013172.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:263156-266404:- | gene-YLR071C_PE2H4 | rna-NM_001181958.1_PE2H4 | cds-NP_013172.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:275378-278626:- | gene-YLR071C_S288C | rna-NM_001181958.1_S288C | cds-NP_013172.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:95565-98813:+ | gene-YLR071C_SA1 | rna-NM_001181958.1_SA1 | cds-NP_013172.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:257423-260671:- | gene-YLR071C_ThermosaccDry | rna-NM_001181958.1_ThermosaccDry | cds-NP_013172.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:271108-274356:- | gene-YLR071C_VR1 | rna-NM_001181958.1_VR1 | cds-NP_013172.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:256810-260058:- | gene-YLR071C_ZTW1 | rna-NM_001181958.1_ZTW1 | cds-NP_013172.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:265697-268945:- | gene-YLR071C_Sparadoxus | rna-NM_001181958.1_Sparadoxus | cds-NP_013172.1_Sparadoxus | 92.2 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |