Gene name: RGD1
Reference locus (S288C): YBR260C
Gene biotype: protein_coding
Description: Rho gtpase-activating protein rgd1; GTPase-activating protein (RhoGAP) for Rho3p and Rho4p; possibly involved in control of actin cytoskeleton organization
Top 10 interactors (score): RHO4 (0.977); RHO3 (0.967); RGD2 (0.947); RHO2 (0.947); HOF1 (0.941); MID2 (0.921); RHO1 (0.914); SLG1 (0.885); RHO5 (0.847); LRG1 (0.821); LAS17 (0.796); VRP1 (0.791); FYV8 (0.773); RGA1 (0.756); CDC42 (0.748); CYK3 (0.738); RGA2 (0.732); TUS1 (0.663); RGL1 (0.652); ACK1 (0.621)
Homologues (species, bitscore): ARHGAP9 (Homo sapiens, 109.8); Arhgap9 (Mus musculus, 111.3); abr (Danio rerio, 109.0); bcr (Xenopus tropicalis, 105.9); RhoGAP19D (Drosophila melanogaster, 80.1); tag-325 (Caenorhabditis elegans, 107.8); REN1 (Arabidopsis thaliana, 53.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:716920-718920:- | gene-YBR260C_AKU4011 | rna-NM_001178608.1_AKU4011 | cds-NP_009819.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:87946-89946:- | gene-YBR260C_BG1 | rna-NM_001178608.1_BG1 | cds-NP_009819.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:718086-720086:- | gene-YBR260C_Bruggeman | rna-NM_001178608.1_Bruggeman | cds-NP_009819.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:721813-723813:- | gene-YBR260C_CAT1 | rna-NM_001178608.1_CAT1 | cds-NP_009819.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:708486-710486:- | gene-YBR260C_CBS1585 | rna-NM_001178608.1_CBS1585 | cds-NP_009819.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:714934-716934:- | gene-YBR260C_CBS436 | rna-NM_001178608.1_CBS436 | cds-NP_009819.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:803101-805101:- | gene-YBR260C_CBS6412 | rna-NM_001178608.1_CBS6412 | cds-NP_009819.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:714534-716534:- | gene-YBR260C_CBS6413 | rna-NM_001178608.1_CBS6413 | cds-NP_009819.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:726547-728547:- | gene-YBR260C_CENPK1137D | rna-NM_001178608.1_CENPK1137D | cds-NP_009819.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:839957-841957:- | gene-YBR260C_EthanolRed | rna-NM_001178608.1_EthanolRed | cds-NP_009819.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:733304-735304:- | gene-YBR260C_FaliES1 | rna-NM_001178608.1_FaliES1 | cds-NP_009819.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:68752-70752:+ | gene-YBR260C_JAY291 | rna-NM_001178608.1_JAY291 | cds-NP_009819.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:720129-722129:- | gene-YBR260C_MUCL30387 | rna-NM_001178608.1_MUCL30387 | cds-NP_009819.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:737212-739212:- | gene-YBR260C_MUCL30388 | rna-NM_001178608.1_MUCL30388 | cds-NP_009819.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:706793-708793:- | gene-YBR260C_MUCL39482 | rna-NM_001178608.1_MUCL39482 | cds-NP_009819.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:716667-718667:- | gene-YBR260C_MUCL42920 | rna-NM_001178608.1_MUCL42920 | cds-NP_009819.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:732436-734436:- | gene-YBR260C_NCIM3186 | rna-NM_001178608.1_NCIM3186 | cds-NP_009819.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:708682-710682:- | gene-YBR260C_NCYC1407 | rna-NM_001178608.1_NCYC1407 | cds-NP_009819.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:731814-733814:- | gene-YBR260C_PE2H3 | rna-NM_001178608.1_PE2H3 | cds-NP_009819.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:729490-731490:- | gene-YBR260C_PE2H4 | rna-NM_001178608.1_PE2H4 | cds-NP_009819.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:732639-734639:- | gene-YBR260C_S288C | rna-NM_001178608.1_S288C | cds-NP_009819.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:87766-89766:- | gene-YBR260C_SA1 | rna-NM_001178608.1_SA1 | cds-NP_009819.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:732296-734296:- | gene-YBR260C_ThermosaccDry | rna-NM_001178608.1_ThermosaccDry | cds-NP_009819.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:712513-714513:- | gene-YBR260C_VR1 | rna-NM_001178608.1_VR1 | cds-NP_009819.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:705143-707142:- | gene-YBR260C_ZTW1 | rna-NM_001178608.1_ZTW1 | cds-NP_009819.1_ZTW1 | 99.5 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:749055-751055:- | gene-YBR260C_Sparadoxus | rna-NM_001178608.1_Sparadoxus | cds-NP_009819.1_Sparadoxus | 90.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |