Gene name: RFU1
Reference locus (S288C): YLR073C
Gene biotype: protein_coding
Description: Regulator of free ubiquitin chains 1; Protein that inhibits Doa4p deubiquitinating activity; contributes to ubiquitin homeostasis by regulating the conversion of free ubiquitin chains to ubiquitin monomers by Doa4p; GFP-fusion protein localizes to endosomes
Top 10 interactors (score): BRO1 (0.975); DOA4 (0.886); UBP14 (0.787); NOG2 (0.628); RIM20 (0.62); VHR2 (0.615); ECL1 (0.613); UBP13 (0.574); RMD5 (0.559); VTS1 (0.538); MSC2 (0.53); UBI4 (0.526); UBP1 (0.522); ECM29 (0.499); SKP2 (0.499); APE3 (0.499); RSP5 (0.483); AAH1 (0.482); YPL191C (0.482); YNL203C (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:263494-264096:- | gene-YLR073C_AKU4011 | rna-NM_001181960.1_AKU4011 | cds-NP_013174.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:226625-227227:- | gene-YLR073C_BG1 | rna-NM_001181960.1_BG1 | cds-NP_013174.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:273400-274002:- | gene-YLR073C_Bruggeman | rna-NM_001181960.1_Bruggeman | cds-NP_013174.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:273718-274320:- | gene-YLR073C_CAT1 | rna-NM_001181960.1_CAT1 | cds-NP_013174.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:270608-271210:- | gene-YLR073C_CBS1585 | rna-NM_001181960.1_CBS1585 | cds-NP_013174.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:261229-261831:- | gene-YLR073C_CBS436 | rna-NM_001181960.1_CBS436 | cds-NP_013174.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:269044-269645:- | gene-YLR073C_CBS6412 | rna-NM_001181960.1_CBS6412 | cds-NP_013174.1_CBS6412 | 99.0 | 99.8 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:270879-271481:- | gene-YLR073C_CBS6413 | rna-NM_001181960.1_CBS6413 | cds-NP_013174.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:266040-266642:- | gene-YLR073C_CENPK1137D | rna-NM_001181960.1_CENPK1137D | cds-NP_013174.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:263013-263615:- | gene-YLR073C_EthanolRed | rna-NM_001181960.1_EthanolRed | cds-NP_013174.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:262889-263491:- | gene-YLR073C_FaliES1 | rna-NM_001181960.1_FaliES1 | cds-NP_013174.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:37818-38420:- | gene-YLR073C_JAY291 | rna-NM_001181960.1_JAY291 | cds-NP_013174.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:270767-271369:- | gene-YLR073C_MUCL30387 | rna-NM_001181960.1_MUCL30387 | cds-NP_013174.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:278413-279015:- | gene-YLR073C_MUCL30388 | rna-NM_001181960.1_MUCL30388 | cds-NP_013174.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:271130-271732:- | gene-YLR073C_MUCL39482 | rna-NM_001181960.1_MUCL39482 | cds-NP_013174.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:271043-271645:- | gene-YLR073C_MUCL42920 | rna-NM_001181960.1_MUCL42920 | cds-NP_013174.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:280993-281595:- | gene-YLR073C_NCIM3186 | rna-NM_001181960.1_NCIM3186 | cds-NP_013174.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:263195-263797:- | gene-YLR073C_NCYC1407 | rna-NM_001181960.1_NCYC1407 | cds-NP_013174.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:269060-269662:- | gene-YLR073C_PE2H3 | rna-NM_001181960.1_PE2H3 | cds-NP_013174.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:268801-269403:- | gene-YLR073C_PE2H4 | rna-NM_001181960.1_PE2H4 | cds-NP_013174.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:281019-281621:- | gene-YLR073C_S288C | rna-NM_001181960.1_S288C | cds-NP_013174.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:92504-93106:+ | gene-YLR073C_SA1 | rna-NM_001181960.1_SA1 | cds-NP_013174.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:263065-263667:- | gene-YLR073C_ThermosaccDry | rna-NM_001181960.1_ThermosaccDry | cds-NP_013174.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:276749-277351:- | gene-YLR073C_VR1 | rna-NM_001181960.1_VR1 | cds-NP_013174.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:262452-263054:- | gene-YLR073C_ZTW1 | rna-NM_001181960.1_ZTW1 | cds-NP_013174.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:271340-271933:- | gene-YLR073C_Sparadoxus | rna-NM_001181960.1_Sparadoxus | cds-NP_013174.1_Sparadoxus | 89.3 | 98.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |