Gene name: RFM1
Reference locus (S288C): YOR279C
Gene biotype: protein_coding
Description: Repression factor of MSEs protein 1; Component of the Sum1p-Rfm1p-Hst1p complex; Rfm1p tethers the Hst1p histone deacetylase to the DNA-binding protein Sum1p; complex is involved in transcriptional repression of middle sporulation genes and in initiation of DNA replication
Top 10 interactors (score): SUM1 (0.998); HST1 (0.992); NDT80 (0.745); NRK1 (0.696); SIR2 (0.692); SPR3 (0.574); IME2 (0.57); SMK1 (0.562); SIR4 (0.526); SET1 (0.516); RIM2 (0.499); SPS18 (0.499); AKL1 (0.495); SIR3 (0.487); HTB1 (0.483); HAP2 (0.483); RSC4 (0.4)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:834508-835440:- | gene-YOR279C_AKU4011 | rna-NM_001183698.3_AKU4011 | cds-NP_014922.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:236471-237403:- | gene-YOR279C_BG1 | rna-NM_001183698.3_BG1 | cds-NP_014922.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:819941-820873:- | gene-YOR279C_Bruggeman | rna-NM_001183698.3_Bruggeman | cds-NP_014922.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:820612-821544:- | gene-YOR279C_CAT1 | rna-NM_001183698.3_CAT1 | cds-NP_014922.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:817526-818458:- | gene-YOR279C_CBS1585 | rna-NM_001183698.3_CBS1585 | cds-NP_014922.3_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:816173-817105:- | gene-YOR279C_CBS436 | rna-NM_001183698.3_CBS436 | cds-NP_014922.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:814379-815311:- | gene-YOR279C_CBS6412 | rna-NM_001183698.3_CBS6412 | cds-NP_014922.3_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:823237-824169:- | gene-YOR279C_CBS6413 | rna-NM_001183698.3_CBS6413 | cds-NP_014922.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:843468-844400:- | gene-YOR279C_CENPK1137D | rna-NM_001183698.3_CENPK1137D | cds-NP_014922.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:810635-811567:- | gene-YOR279C_EthanolRed | rna-NM_001183698.3_EthanolRed | cds-NP_014922.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:816034-816966:- | gene-YOR279C_FaliES1 | rna-NM_001183698.3_FaliES1 | cds-NP_014922.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:9950-10882:+ | gene-YOR279C_JAY291 | rna-NM_001183698.3_JAY291 | cds-NP_014922.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:824178-825110:- | gene-YOR279C_MUCL30387 | rna-NM_001183698.3_MUCL30387 | cds-NP_014922.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:832155-833087:- | gene-YOR279C_MUCL30388 | rna-NM_001183698.3_MUCL30388 | cds-NP_014922.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:824872-825804:- | gene-YOR279C_MUCL39482 | rna-NM_001183698.3_MUCL39482 | cds-NP_014922.3_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:834357-835289:- | gene-YOR279C_MUCL42920 | rna-NM_001183698.3_MUCL42920 | cds-NP_014922.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:843587-844519:- | gene-YOR279C_NCIM3186 | rna-NM_001183698.3_NCIM3186 | cds-NP_014922.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:825077-826009:- | gene-YOR279C_NCYC1407 | rna-NM_001183698.3_NCYC1407 | cds-NP_014922.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:824153-825085:- | gene-YOR279C_PE2H3 | rna-NM_001183698.3_PE2H3 | cds-NP_014922.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:834530-835462:- | gene-YOR279C_PE2H4 | rna-NM_001183698.3_PE2H4 | cds-NP_014922.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:843698-844630:- | gene-YOR279C_S288C | rna-NM_001183698.3_S288C | cds-NP_014922.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:253714-254646:- | gene-YOR279C_SA1 | rna-NM_001183698.3_SA1 | cds-NP_014922.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:815217-816149:- | gene-YOR279C_ThermosaccDry | rna-NM_001183698.3_ThermosaccDry | cds-NP_014922.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:878593-879525:- | gene-YOR279C_VR1 | rna-NM_001183698.3_VR1 | cds-NP_014922.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:548105-549037:- | gene-YOR279C_ZTW1 | rna-NM_001183698.3_ZTW1 | cds-NP_014922.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:820873-821805:- | gene-YOR279C_Sparadoxus | rna-NM_001183698.3_Sparadoxus | cds-NP_014922.3_Sparadoxus | 89.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |