Gene name: RFC5
Reference locus (S288C): YBR087W
Gene biotype: protein_coding
Description: Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon
Top 10 interactors (score): RFC4 (0.999); ELG1 (0.999); RAD24 (0.999); CTF18 (0.999); RFC1 (0.999); POL30 (0.999); RFC3 (0.999); RFC2 (0.999); POL12 (0.996); CSM3 (0.994); PRI2 (0.994); DCC1 (0.993); PRI1 (0.989); MCM6 (0.988); MCM7 (0.985); MCM2 (0.984); RFA2 (0.979); MCM3 (0.978); MCM5 (0.977); RFA1 (0.975)
Homologues (species, bitscore): RFC3 (Homo sapiens, 297.0); Rfc3 (Mus musculus, 297.4); rfc3 (Danio rerio, 308.1); rfc3 (Xenopus tropicalis, 297.0); RfC38 (Drosophila melanogaster, 268.5); rfc-3 (Caenorhabditis elegans, 290.0); EMB2775 (Arabidopsis thaliana, 263.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:406133-407197:+ | gene-YBR087W_AKU4011 | rna-NM_001178435.3_AKU4011 | cds-NP_009644.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:397171-398235:+ | gene-YBR087W_BG1 | rna-NM_001178435.3_BG1 | cds-NP_009644.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:407708-408772:+ | gene-YBR087W_Bruggeman | rna-NM_001178435.3_Bruggeman | cds-NP_009644.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:410682-411746:+ | gene-YBR087W_CAT1 | rna-NM_001178435.3_CAT1 | cds-NP_009644.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:398418-399482:+ | gene-YBR087W_CBS1585 | rna-NM_001178435.3_CBS1585 | cds-NP_009644.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:406540-407604:+ | gene-YBR087W_CBS436 | rna-NM_001178435.3_CBS436 | cds-NP_009644.3_CBS436 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:496647-497711:+ | gene-YBR087W_CBS6412 | rna-NM_001178435.3_CBS6412 | cds-NP_009644.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:403558-404622:+ | gene-YBR087W_CBS6413 | rna-NM_001178435.3_CBS6413 | cds-NP_009644.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:417517-418581:+ | gene-YBR087W_CENPK1137D | rna-NM_001178435.3_CENPK1137D | cds-NP_009644.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:532924-533988:+ | gene-YBR087W_EthanolRed | rna-NM_001178435.3_EthanolRed | cds-NP_009644.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:422207-423271:+ | gene-YBR087W_FaliES1 | rna-NM_001178435.3_FaliES1 | cds-NP_009644.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000013.1:3908-4972:- | gene-YBR087W_JAY291 | rna-NM_001178435.3_JAY291 | cds-NP_009644.3_JAY291 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:409945-411009:+ | gene-YBR087W_MUCL30387 | rna-NM_001178435.3_MUCL30387 | cds-NP_009644.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:408940-410004:+ | gene-YBR087W_MUCL30388 | rna-NM_001178435.3_MUCL30388 | cds-NP_009644.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:398409-399473:+ | gene-YBR087W_MUCL39482 | rna-NM_001178435.3_MUCL39482 | cds-NP_009644.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:405622-406686:+ | gene-YBR087W_MUCL42920 | rna-NM_001178435.3_MUCL42920 | cds-NP_009644.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:423562-424626:+ | gene-YBR087W_NCIM3186 | rna-NM_001178435.3_NCIM3186 | cds-NP_009644.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:399341-400405:+ | gene-YBR087W_NCYC1407 | rna-NM_001178435.3_NCYC1407 | cds-NP_009644.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:411958-413022:+ | gene-YBR087W_PE2H3 | rna-NM_001178435.3_PE2H3 | cds-NP_009644.3_PE2H3 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:409634-410698:+ | gene-YBR087W_PE2H4 | rna-NM_001178435.3_PE2H4 | cds-NP_009644.3_PE2H4 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:423765-424829:+ | gene-YBR087W_S288C | rna-NM_001178435.3_S288C | cds-NP_009644.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:52875-53939:- | gene-YBR087W_SA1 | rna-NM_001178435.3_SA1 | cds-NP_009644.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:421214-422278:+ | gene-YBR087W_ThermosaccDry | rna-NM_001178435.3_ThermosaccDry | cds-NP_009644.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:403220-404284:+ | gene-YBR087W_VR1 | rna-NM_001178435.3_VR1 | cds-NP_009644.3_VR1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:396880-397944:+ | gene-YBR087W_ZTW1 | rna-NM_001178435.3_ZTW1 | cds-NP_009644.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:433735-434799:+ | gene-YBR087W_Sparadoxus | rna-NM_001178435.3_Sparadoxus | cds-NP_009644.3_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |