Gene name: RFC3
Reference locus (S288C): YNL290W
Gene biotype: protein_coding
Description: Subunit of heteropentameric Replication factor C (RF-C); which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): RFC4 (0.999); RFC1 (0.999); RFC2 (0.999); RFC5 (0.999); POL30 (0.999); ELG1 (0.999); CTF18 (0.999); RAD24 (0.999); DCC1 (0.995); POL12 (0.99); MCM3 (0.989); POL1 (0.986); PRI2 (0.983); MCM6 (0.982); MCM7 (0.982); MCM4 (0.982); RFA1 (0.978); MCM2 (0.978); PRI1 (0.978); POL3 (0.976)
Homologues (species, bitscore): RFC5 (Homo sapiens, 345.5); Rfc5 (Mus musculus, 338.2); rfc5 (Danio rerio, 342.4); rfc5 (Xenopus tropicalis, 342.0); RfC3 (Drosophila melanogaster, 309.7); F44B9.8 (Caenorhabditis elegans, 297.4); EMB2810 (Arabidopsis thaliana, 312.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:80036-81058:+ | gene-YNL290W_AKU4011 | rna-NM_001183128.1_AKU4011 | cds-NP_014109.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000074.1:9591-10613:- | gene-YNL290W_BG1 | rna-NM_001183128.1_BG1 | cds-NP_014109.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:89379-90401:+ | gene-YNL290W_Bruggeman | rna-NM_001183128.1_Bruggeman | cds-NP_014109.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:91984-93006:+ | gene-YNL290W_CAT1 | rna-NM_001183128.1_CAT1 | cds-NP_014109.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:80366-81388:+ | gene-YNL290W_CBS1585 | rna-NM_001183128.1_CBS1585 | cds-NP_014109.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:80852-81874:+ | gene-YNL290W_CBS436 | rna-NM_001183128.1_CBS436 | cds-NP_014109.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:77023-78045:+ | gene-YNL290W_CBS6412 | rna-NM_001183128.1_CBS6412 | cds-NP_014109.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:77214-78236:+ | gene-YNL290W_CBS6413 | rna-NM_001183128.1_CBS6413 | cds-NP_014109.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:80051-81073:+ | gene-YNL290W_CENPK1137D | rna-NM_001183128.1_CENPK1137D | cds-NP_014109.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:77052-78074:+ | gene-YNL290W_EthanolRed | rna-NM_001183128.1_EthanolRed | cds-NP_014109.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:77951-78973:+ | gene-YNL290W_FaliES1 | rna-NM_001183128.1_FaliES1 | cds-NP_014109.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000171.1:9245-10267:- | gene-YNL290W_JAY291 | rna-NM_001183128.1_JAY291 | cds-NP_014109.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:89877-90899:+ | gene-YNL290W_MUCL30387 | rna-NM_001183128.1_MUCL30387 | cds-NP_014109.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:82659-83681:+ | gene-YNL290W_MUCL30388 | rna-NM_001183128.1_MUCL30388 | cds-NP_014109.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:78000-79022:+ | gene-YNL290W_MUCL39482 | rna-NM_001183128.1_MUCL39482 | cds-NP_014109.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:79688-80710:+ | gene-YNL290W_MUCL42920 | rna-NM_001183128.1_MUCL42920 | cds-NP_014109.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:86187-87209:+ | gene-YNL290W_NCIM3186 | rna-NM_001183128.1_NCIM3186 | cds-NP_014109.1_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:79332-80354:+ | gene-YNL290W_NCYC1407 | rna-NM_001183128.1_NCYC1407 | cds-NP_014109.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:76528-77550:+ | gene-YNL290W_PE2H3 | rna-NM_001183128.1_PE2H3 | cds-NP_014109.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:75916-76938:+ | gene-YNL290W_PE2H4 | rna-NM_001183128.1_PE2H4 | cds-NP_014109.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:86218-87240:+ | gene-YNL290W_S288C | rna-NM_001183128.1_S288C | cds-NP_014109.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000052.1:9977-10999:- | gene-YNL290W_SA1 | rna-NM_001183128.1_SA1 | cds-NP_014109.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:78808-79830:+ | gene-YNL290W_ThermosaccDry | rna-NM_001183128.1_ThermosaccDry | cds-NP_014109.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:91347-92369:+ | gene-YNL290W_VR1 | rna-NM_001183128.1_VR1 | cds-NP_014109.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000029.1:70019-71041:+ | gene-YNL290W_ZTW1 | rna-NM_001183128.1_ZTW1 | cds-NP_014109.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:88088-89110:+ | gene-YNL290W_Sparadoxus | rna-NM_001183128.1_Sparadoxus | cds-NP_014109.1_Sparadoxus | 90.3 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |