Gene name: RFC2
Reference locus (S288C): YJR068W
Gene biotype: protein_coding
Description: Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon
Top 10 interactors (score): RAD24 (0.999); RFC5 (0.999); POL30 (0.999); RFC3 (0.999); ELG1 (0.999); RFC4 (0.999); RFC1 (0.999); DCC1 (0.998); MCM7 (0.995); CTF18 (0.993); PRI1 (0.991); POL12 (0.991); RFA1 (0.991); MCM2 (0.99); CDC6 (0.989); MCM4 (0.988); POL3 (0.988); RFA2 (0.988); RAD17 (0.988); MCM5 (0.986)
Homologues (species, bitscore): RFC4 (Homo sapiens, 346.3); Rfc4 (Mus musculus, 351.3); rfc4 (Danio rerio, 256.1); rfc4 (Xenopus tropicalis, 346.7); CG8142 (Drosophila melanogaster, 313.5); rfc-4 (Caenorhabditis elegans, 229.9); EMB1968 (Arabidopsis thaliana, 318.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:539169-540230:+ | gene-YJR068W_AKU4011 | rna-NM_001181726.3_AKU4011 | cds-NP_012602.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:67388-68449:- | gene-YJR068W_BG1 | rna-NM_001181726.3_BG1 | cds-NP_012602.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:552685-553746:+ | gene-YJR068W_Bruggeman | rna-NM_001181726.3_Bruggeman | cds-NP_012602.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:556992-558053:+ | gene-YJR068W_CAT1 | rna-NM_001181726.3_CAT1 | cds-NP_012602.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:551233-552294:+ | gene-YJR068W_CBS1585 | rna-NM_001181726.3_CBS1585 | cds-NP_012602.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:569305-570366:+ | gene-YJR068W_CBS436 | rna-NM_001181726.3_CBS436 | cds-NP_012602.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:538382-539443:+ | gene-YJR068W_CBS6412 | rna-NM_001181726.3_CBS6412 | cds-NP_012602.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:540680-541741:+ | gene-YJR068W_CBS6413 | rna-NM_001181726.3_CBS6413 | cds-NP_012602.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:550006-551067:+ | gene-YJR068W_CENPK1137D | rna-NM_001181726.3_CENPK1137D | cds-NP_012602.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:543563-544624:+ | gene-YJR068W_EthanolRed | rna-NM_001181726.3_EthanolRed | cds-NP_012602.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:555029-556090:+ | gene-YJR068W_FaliES1 | rna-NM_001181726.3_FaliES1 | cds-NP_012602.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:133296-134357:- | gene-YJR068W_JAY291 | rna-NM_001181726.3_JAY291 | cds-NP_012602.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:553215-554276:+ | gene-YJR068W_MUCL30387 | rna-NM_001181726.3_MUCL30387 | cds-NP_012602.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:550507-551568:+ | gene-YJR068W_MUCL30388 | rna-NM_001181726.3_MUCL30388 | cds-NP_012602.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:544695-545756:+ | gene-YJR068W_MUCL39482 | rna-NM_001181726.3_MUCL39482 | cds-NP_012602.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:548938-549999:+ | gene-YJR068W_MUCL42920 | rna-NM_001181726.3_MUCL42920 | cds-NP_012602.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:567622-568683:+ | gene-YJR068W_NCIM3186 | rna-NM_001181726.3_NCIM3186 | cds-NP_012602.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:542259-543320:+ | gene-YJR068W_NCYC1407 | rna-NM_001181726.3_NCYC1407 | cds-NP_012602.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:560152-561213:+ | gene-YJR068W_PE2H3 | rna-NM_001181726.3_PE2H3 | cds-NP_012602.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:553848-554909:+ | gene-YJR068W_PE2H4 | rna-NM_001181726.3_PE2H4 | cds-NP_012602.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:567643-568704:+ | gene-YJR068W_S288C | rna-NM_001181726.3_S288C | cds-NP_012602.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000038.1:26222-27283:+ | gene-YJR068W_SA1 | rna-NM_001181726.3_SA1 | cds-NP_012602.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:548961-550022:+ | gene-YJR068W_ThermosaccDry | rna-NM_001181726.3_ThermosaccDry | cds-NP_012602.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:551139-552200:+ | gene-YJR068W_VR1 | rna-NM_001181726.3_VR1 | cds-NP_012602.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:528362-529423:+ | gene-YJR068W_ZTW1 | rna-NM_001181726.3_ZTW1 | cds-NP_012602.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:561731-562792:+ | gene-YJR068W_Sparadoxus | rna-NM_001181726.3_Sparadoxus | cds-NP_012602.3_Sparadoxus | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |