Gene name: REX4
Reference locus (S288C): YOL080C
Gene biotype: protein_coding
Description: Putative 3'-5' exonuclease; Putative RNA exonuclease; possibly involved in pre-rRNA processing and ribosome assembly
Top 10 interactors (score): SSF1 (0.98); PWP1 (0.978); RNT1 (0.971); DBP3 (0.97); BRX1 (0.966); IMP4 (0.963); NOP15 (0.957); EBP2 (0.949); RPF2 (0.948); MRT4 (0.938); BFR2 (0.936); MAK16 (0.936); AAH1 (0.935); NOP58 (0.933); NOP4 (0.933); TRM11 (0.932); RRS1 (0.93); UTP23 (0.928); CIC1 (0.925); DBP8 (0.92)
Homologues (species, bitscore): REXO4 (Homo sapiens, 174.5); Rexo4 (Mus musculus, 177.2); REXO4 (Danio rerio, 188.3); rexo4 (Xenopus tropicalis, 141.0); CG6833 (Drosophila melanogaster, 177.6); Y17G7B.12 (Caenorhabditis elegans, 167.2); AT3G15080 (Arabidopsis thaliana, 172.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:164195-165064:- | gene-YOL080C_AKU4011 | rna-NM_001183334.1_AKU4011 | cds-NP_014561.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:129009-129878:- | gene-YOL080C_BG1 | rna-NM_001183334.1_BG1 | cds-NP_014561.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:165884-166753:- | gene-YOL080C_Bruggeman | rna-NM_001183334.1_Bruggeman | cds-NP_014561.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:165376-166245:- | gene-YOL080C_CAT1 | rna-NM_001183334.1_CAT1 | cds-NP_014561.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:158588-159457:- | gene-YOL080C_CBS1585 | rna-NM_001183334.1_CBS1585 | cds-NP_014561.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:163775-164644:- | gene-YOL080C_CBS436 | rna-NM_001183334.1_CBS436 | cds-NP_014561.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:158516-159385:- | gene-YOL080C_CBS6412 | rna-NM_001183334.1_CBS6412 | cds-NP_014561.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:165451-166320:- | gene-YOL080C_CBS6413 | rna-NM_001183334.1_CBS6413 | cds-NP_014561.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:180313-181182:- | gene-YOL080C_CENPK1137D | rna-NM_001183334.1_CENPK1137D | cds-NP_014561.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:161510-162379:- | gene-YOL080C_EthanolRed | rna-NM_001183334.1_EthanolRed | cds-NP_014561.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:163837-164706:- | gene-YOL080C_FaliES1 | rna-NM_001183334.1_FaliES1 | cds-NP_014561.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000018.1:100828-101697:+ | gene-YOL080C_JAY291 | rna-NM_001183334.1_JAY291 | cds-NP_014561.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:169654-170523:- | gene-YOL080C_MUCL30387 | rna-NM_001183334.1_MUCL30387 | cds-NP_014561.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:173333-174202:- | gene-YOL080C_MUCL30388 | rna-NM_001183334.1_MUCL30388 | cds-NP_014561.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:166509-167378:- | gene-YOL080C_MUCL39482 | rna-NM_001183334.1_MUCL39482 | cds-NP_014561.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:182006-182875:- | gene-YOL080C_MUCL42920 | rna-NM_001183334.1_MUCL42920 | cds-NP_014561.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:180447-181316:- | gene-YOL080C_NCIM3186 | rna-NM_001183334.1_NCIM3186 | cds-NP_014561.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:173129-173998:- | gene-YOL080C_NCYC1407 | rna-NM_001183334.1_NCYC1407 | cds-NP_014561.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:156128-156997:- | gene-YOL080C_PE2H3 | rna-NM_001183334.1_PE2H3 | cds-NP_014561.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:167117-167986:- | gene-YOL080C_PE2H4 | rna-NM_001183334.1_PE2H4 | cds-NP_014561.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:180558-181427:- | gene-YOL080C_S288C | rna-NM_001183334.1_S288C | cds-NP_014561.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:148438-149307:- | gene-YOL080C_SA1 | rna-NM_001183334.1_SA1 | cds-NP_014561.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:162845-163714:- | gene-YOL080C_ThermosaccDry | rna-NM_001183334.1_ThermosaccDry | cds-NP_014561.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:163628-164497:- | gene-YOL080C_VR1 | rna-NM_001183334.1_VR1 | cds-NP_014561.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:162512-163381:- | gene-YOL080C_ZTW1 | rna-NM_001183334.1_ZTW1 | cds-NP_014561.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:166060-166926:- | gene-YOL080C_Sparadoxus | rna-NM_001183334.1_Sparadoxus | cds-NP_014561.1_Sparadoxus | 88.5 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |