Gene name: REX3
Reference locus (S288C): YLR107W
Gene biotype: protein_coding
Description: RNA exonuclease; required for maturation of the RNA component of RNase MRP; functions redundantly with Rnh70p and Rex2p in processing of U5 snRNA and RNase P RNA; member of RNase D family of exonucleases
Top 10 interactors (score): REX2 (0.999); NGL2 (0.926); RNH70 (0.893); RRP6 (0.822); YLR334C (0.746); RAT1 (0.686); RNH1 (0.681); TMA108 (0.674); GCD10 (0.668); ISY1 (0.662); DIS3 (0.657); YET2 (0.651); RTC6 (0.648); TRZ1 (0.647); PAN3 (0.628); LRP1 (0.607); PUS9 (0.603); ECM25 (0.593); MPP10 (0.578); RSM28 (0.575)
Homologues (species, bitscore): REXO1 (Homo sapiens, 116.7); Gm7104 (Mus musculus, 123.2); rexo1 (Danio rerio, 127.1); rexo1 (Xenopus tropicalis, 122.9); CG12877 (Drosophila melanogaster, 127.1); pqe-1 (Caenorhabditis elegans, 128.6); AT5G25800 (Arabidopsis thaliana, 111.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:346602-347816:+ | gene-YLR107W_AKU4011 | rna-NM_001181994.1_AKU4011 | cds-NP_013208.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:309855-311069:+ | gene-YLR107W_BG1 | rna-NM_001181994.1_BG1 | cds-NP_013208.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:356471-357685:+ | gene-YLR107W_Bruggeman | rna-NM_001181994.1_Bruggeman | cds-NP_013208.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:356817-358031:+ | gene-YLR107W_CAT1 | rna-NM_001181994.1_CAT1 | cds-NP_013208.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:353744-354958:+ | gene-YLR107W_CBS1585 | rna-NM_001181994.1_CBS1585 | cds-NP_013208.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:344325-345539:+ | gene-YLR107W_CBS436 | rna-NM_001181994.1_CBS436 | cds-NP_013208.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:352163-353377:+ | gene-YLR107W_CBS6412 | rna-NM_001181994.1_CBS6412 | cds-NP_013208.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:354010-355224:+ | gene-YLR107W_CBS6413 | rna-NM_001181994.1_CBS6413 | cds-NP_013208.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:349137-350351:+ | gene-YLR107W_CENPK1137D | rna-NM_001181994.1_CENPK1137D | cds-NP_013208.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:346162-347376:+ | gene-YLR107W_EthanolRed | rna-NM_001181994.1_EthanolRed | cds-NP_013208.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:345982-347196:+ | gene-YLR107W_FaliES1 | rna-NM_001181994.1_FaliES1 | cds-NP_013208.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:120927-122141:+ | gene-YLR107W_JAY291 | rna-NM_001181994.1_JAY291 | cds-NP_013208.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:353846-355060:+ | gene-YLR107W_MUCL30387 | rna-NM_001181994.1_MUCL30387 | cds-NP_013208.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:361514-362728:+ | gene-YLR107W_MUCL30388 | rna-NM_001181994.1_MUCL30388 | cds-NP_013208.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:354253-355467:+ | gene-YLR107W_MUCL39482 | rna-NM_001181994.1_MUCL39482 | cds-NP_013208.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:354176-355390:+ | gene-YLR107W_MUCL42920 | rna-NM_001181994.1_MUCL42920 | cds-NP_013208.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:364090-365304:+ | gene-YLR107W_NCIM3186 | rna-NM_001181994.1_NCIM3186 | cds-NP_013208.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:346315-347529:+ | gene-YLR107W_NCYC1407 | rna-NM_001181994.1_NCYC1407 | cds-NP_013208.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:352090-353304:+ | gene-YLR107W_PE2H3 | rna-NM_001181994.1_PE2H3 | cds-NP_013208.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:351831-353045:+ | gene-YLR107W_PE2H4 | rna-NM_001181994.1_PE2H4 | cds-NP_013208.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:364116-365330:+ | gene-YLR107W_S288C | rna-NM_001181994.1_S288C | cds-NP_013208.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:8758-9972:- | gene-YLR107W_SA1 | rna-NM_001181994.1_SA1 | cds-NP_013208.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:346155-347369:+ | gene-YLR107W_ThermosaccDry | rna-NM_001181994.1_ThermosaccDry | cds-NP_013208.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:360331-361545:+ | gene-YLR107W_VR1 | rna-NM_001181994.1_VR1 | cds-NP_013208.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:345641-346855:+ | gene-YLR107W_ZTW1 | rna-NM_001181994.1_ZTW1 | cds-NP_013208.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:354350-355564:+ | gene-YLR107W_Sparadoxus | rna-NM_001181994.1_Sparadoxus | cds-NP_013208.1_Sparadoxus | 88.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |