Gene name: REX2
Reference locus (S288C): YLR059C
Gene biotype: protein_coding
Description: Oligoribonuclease, mitochondrial; 3'-5' RNA exonuclease; involved in 3'-end processing of U4 and U5 snRNAs, 5S and 5.8S rRNAs, and RNase P and RNase MRP RNA; localized to mitochondria and null suppresses escape of mtDNA to nucleus in yme1 yme2 mutants; RNase D exonuclease
Top 10 interactors (score): REX3 (0.999); RNH70 (0.99); NHP2 (0.93); NGL2 (0.922); REX4 (0.869); RRP6 (0.846); YME2 (0.826); YME1 (0.785); RPB10 (0.772); NGL3 (0.753); SSF1 (0.745); NGL1 (0.725); RAI1 (0.718); TRZ1 (0.715); DIS3 (0.701); RPB9 (0.699); BPL1 (0.689); RAT1 (0.661); RTC6 (0.659); NOG1 (0.655)
Homologues (species, bitscore): REXO2 (Homo sapiens, 147.1); Rexo2 (Mus musculus, 151.0); smfn (Danio rerio, 150.6); rexo2 (Xenopus tropicalis, 158.7); CG10214 (Drosophila melanogaster, 144.1); C08B6.8 (Caenorhabditis elegans, 118.6); AT2G26970 (Arabidopsis thaliana, 132.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:242224-243033:- | gene-YLR059C_AKU4011 | rna-NM_001181946.1_AKU4011 | cds-NP_013160.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:205347-206156:- | gene-YLR059C_BG1 | rna-NM_001181946.1_BG1 | cds-NP_013160.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:252134-252943:- | gene-YLR059C_Bruggeman | rna-NM_001181946.1_Bruggeman | cds-NP_013160.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:252439-253248:- | gene-YLR059C_CAT1 | rna-NM_001181946.1_CAT1 | cds-NP_013160.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:249359-250168:- | gene-YLR059C_CBS1585 | rna-NM_001181946.1_CBS1585 | cds-NP_013160.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:239973-240782:- | gene-YLR059C_CBS436 | rna-NM_001181946.1_CBS436 | cds-NP_013160.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:247768-248577:- | gene-YLR059C_CBS6412 | rna-NM_001181946.1_CBS6412 | cds-NP_013160.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:249622-250431:- | gene-YLR059C_CBS6413 | rna-NM_001181946.1_CBS6413 | cds-NP_013160.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:238995-239804:- | gene-YLR059C_CENPK1137D | rna-NM_001181946.1_CENPK1137D | cds-NP_013160.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:241736-242545:- | gene-YLR059C_EthanolRed | rna-NM_001181946.1_EthanolRed | cds-NP_013160.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:241623-242432:- | gene-YLR059C_FaliES1 | rna-NM_001181946.1_FaliES1 | cds-NP_013160.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:16544-17353:- | gene-YLR059C_JAY291 | rna-NM_001181946.1_JAY291 | cds-NP_013160.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:249487-250296:- | gene-YLR059C_MUCL30387 | rna-NM_001181946.1_MUCL30387 | cds-NP_013160.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:257142-257951:- | gene-YLR059C_MUCL30388 | rna-NM_001181946.1_MUCL30388 | cds-NP_013160.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:249854-250663:- | gene-YLR059C_MUCL39482 | rna-NM_001181946.1_MUCL39482 | cds-NP_013160.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:249762-250571:- | gene-YLR059C_MUCL42920 | rna-NM_001181946.1_MUCL42920 | cds-NP_013160.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:259712-260521:- | gene-YLR059C_NCIM3186 | rna-NM_001181946.1_NCIM3186 | cds-NP_013160.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:241915-242724:- | gene-YLR059C_NCYC1407 | rna-NM_001181946.1_NCYC1407 | cds-NP_013160.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:247781-248590:- | gene-YLR059C_PE2H3 | rna-NM_001181946.1_PE2H3 | cds-NP_013160.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:247522-248331:- | gene-YLR059C_PE2H4 | rna-NM_001181946.1_PE2H4 | cds-NP_013160.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:259738-260547:- | gene-YLR059C_S288C | rna-NM_001181946.1_S288C | cds-NP_013160.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000046.1:85592-86400:- | gene-YLR059C_SA1 | rna-NM_001181946.1_SA1 | cds-NP_013160.1_SA1 | 99.0 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:241808-242617:- | gene-YLR059C_ThermosaccDry | rna-NM_001181946.1_ThermosaccDry | cds-NP_013160.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:255473-256282:- | gene-YLR059C_VR1 | rna-NM_001181946.1_VR1 | cds-NP_013160.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:241171-241980:- | gene-YLR059C_ZTW1 | rna-NM_001181946.1_ZTW1 | cds-NP_013160.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:250043-250852:- | gene-YLR059C_Sparadoxus | rna-NM_001181946.1_Sparadoxus | cds-NP_013160.1_Sparadoxus | 91.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |