Gene name: RET3
Reference locus (S288C): YPL010W
Gene biotype: protein_coding
Description: Zeta subunit of the coatomer complex (COPI); COPI coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER; Belongs to the adaptor complexes small subunit family
Top 10 interactors (score): SEC28 (0.999); COP1 (0.999); SEC21 (0.999); SEC26 (0.999); RET2 (0.999); SEC27 (0.999); ERD2 (0.95); SEC22 (0.937); ARF1 (0.929); BET1 (0.929); SEC13 (0.9); ARF2 (0.877); SEC24 (0.862); DSL1 (0.831); SPS18 (0.827); SEC39 (0.806); ERP1 (0.795); YPT1 (0.79); SEC23 (0.781); ERP2 (0.779)
Homologues (species, bitscore): COPZ1 (Homo sapiens, 118.2); Copz1 (Mus musculus, 117.9); copz1 (Danio rerio, 119.8); copz1 (Xenopus tropicalis, 121.3); zetaCOP (Drosophila melanogaster, 99.8); F59E10.3 (Caenorhabditis elegans, 105.5); AT1G60970 (Arabidopsis thaliana, 92.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:506507-507076:+ | gene-YPL010W_AKU4011 | rna-NM_001183824.1_AKU4011 | cds-NP_015315.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:390143-390712:- | gene-YPL010W_BG1 | rna-NM_001183824.1_BG1 | cds-NP_015315.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:583444-584013:+ | gene-YPL010W_Bruggeman | rna-NM_001183824.1_Bruggeman | cds-NP_015315.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:625908-626477:+ | gene-YPL010W_CAT1 | rna-NM_001183824.1_CAT1 | cds-NP_015315.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:510669-511238:+ | gene-YPL010W_CBS1585 | rna-NM_001183824.1_CBS1585 | cds-NP_015315.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:524716-525285:+ | gene-YPL010W_CBS436 | rna-NM_001183824.1_CBS436 | cds-NP_015315.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:514421-514990:+ | gene-YPL010W_CBS6412 | rna-NM_001183824.1_CBS6412 | cds-NP_015315.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:507144-507713:+ | gene-YPL010W_CBS6413 | rna-NM_001183824.1_CBS6413 | cds-NP_015315.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:535025-535594:+ | gene-YPL010W_CENPK1137D | rna-NM_001183824.1_CENPK1137D | cds-NP_015315.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:504928-505497:+ | gene-YPL010W_EthanolRed | rna-NM_001183824.1_EthanolRed | cds-NP_015315.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:512758-513327:+ | gene-YPL010W_FaliES1 | rna-NM_001183824.1_FaliES1 | cds-NP_015315.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:121309-121878:+ | gene-YPL010W_JAY291 | rna-NM_001183824.1_JAY291 | cds-NP_015315.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:524397-524966:+ | gene-YPL010W_MUCL30387 | rna-NM_001183824.1_MUCL30387 | cds-NP_015315.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:523501-524070:+ | gene-YPL010W_MUCL30388 | rna-NM_001183824.1_MUCL30388 | cds-NP_015315.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:503909-504478:+ | gene-YPL010W_MUCL39482 | rna-NM_001183824.1_MUCL39482 | cds-NP_015315.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:562985-563554:+ | gene-YPL010W_MUCL42920 | rna-NM_001183824.1_MUCL42920 | cds-NP_015315.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:535001-535570:+ | gene-YPL010W_NCIM3186 | rna-NM_001183824.1_NCIM3186 | cds-NP_015315.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:511183-511752:+ | gene-YPL010W_NCYC1407 | rna-NM_001183824.1_NCYC1407 | cds-NP_015315.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:517837-518406:+ | gene-YPL010W_PE2H3 | rna-NM_001183824.1_PE2H3 | cds-NP_015315.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:517452-518021:+ | gene-YPL010W_PE2H4 | rna-NM_001183824.1_PE2H4 | cds-NP_015315.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:535018-535587:+ | gene-YPL010W_S288C | rna-NM_001183824.1_S288C | cds-NP_015315.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000076.1:31747-32316:+ | gene-YPL010W_SA1 | rna-NM_001183824.1_SA1 | cds-NP_015315.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:512557-513126:+ | gene-YPL010W_ThermosaccDry | rna-NM_001183824.1_ThermosaccDry | cds-NP_015315.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:527937-528506:+ | gene-YPL010W_VR1 | rna-NM_001183824.1_VR1 | cds-NP_015315.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:511842-512411:+ | gene-YPL010W_ZTW1 | rna-NM_001183824.1_ZTW1 | cds-NP_015315.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:511722-512291:+ | gene-YPL010W_Sparadoxus | rna-NM_001183824.1_Sparadoxus | cds-NP_015315.1_Sparadoxus | 95.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |