Gene name: RET2
Reference locus (S288C): YFR051C
Gene biotype: protein_coding
Description: Delta subunit of the coatomer complex (COPI); COPI coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER; Belongs to the adaptor complexes medium subunit family. Delta-COP subfamily
Top 10 interactors (score): COP1 (0.999); SEC21 (0.999); SEC27 (0.999); SEC28 (0.999); RET3 (0.999); SEC26 (0.999); ERV25 (0.994); STT3 (0.975); OST3 (0.971); DSL1 (0.967); ARF1 (0.959); SEC23 (0.955); SEC13 (0.954); YPT11 (0.951); TIP20 (0.948); SEC22 (0.932); SEC24 (0.925); SEC31 (0.91); SEC39 (0.895); SLY1 (0.886)
Homologues (species, bitscore): ARCN1 (Homo sapiens, 244.6); Arcn1 (Mus musculus, 245.4); arcn1a (Danio rerio, 243.0); arcn1 (Xenopus tropicalis, 243.0); deltaCOP (Drosophila melanogaster, 243.8); C13B9.3 (Caenorhabditis elegans, 202.6); AT5G05010 (Arabidopsis thaliana, 215.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:240311-241951:- | gene-YFR051C_AKU4011 | rna-NM_001180016.3_AKU4011 | cds-NP_116709.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:19056-20696:+ | gene-YFR051C_BG1 | rna-NM_001180016.3_BG1 | cds-NP_116709.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:243965-245605:- | gene-YFR051C_Bruggeman | rna-NM_001180016.3_Bruggeman | cds-NP_116709.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:245939-247579:- | gene-YFR051C_CAT1 | rna-NM_001180016.3_CAT1 | cds-NP_116709.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:241811-243451:- | gene-YFR051C_CBS1585 | rna-NM_001180016.3_CBS1585 | cds-NP_116709.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:214774-216414:- | gene-YFR051C_CBS436 | rna-NM_001180016.3_CBS436 | cds-NP_116709.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:240885-242525:- | gene-YFR051C_CBS6412 | rna-NM_001180016.3_CBS6412 | cds-NP_116709.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:243559-245199:- | gene-YFR051C_CBS6413 | rna-NM_001180016.3_CBS6413 | cds-NP_116709.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:246250-247890:- | gene-YFR051C_CENPK1137D | rna-NM_001180016.3_CENPK1137D | cds-NP_116709.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:239430-241070:- | gene-YFR051C_EthanolRed | rna-NM_001180016.3_EthanolRed | cds-NP_116709.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:241080-242720:- | gene-YFR051C_FaliES1 | rna-NM_001180016.3_FaliES1 | cds-NP_116709.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000453.1:44212-45852:- | gene-YFR051C_JAY291 | rna-NM_001180016.3_JAY291 | cds-NP_116709.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:244413-246053:- | gene-YFR051C_MUCL30387 | rna-NM_001180016.3_MUCL30387 | cds-NP_116709.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:239892-241532:- | gene-YFR051C_MUCL30388 | rna-NM_001180016.3_MUCL30388 | cds-NP_116709.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:239733-241373:- | gene-YFR051C_MUCL39482 | rna-NM_001180016.3_MUCL39482 | cds-NP_116709.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:239333-240973:- | gene-YFR051C_MUCL42920 | rna-NM_001180016.3_MUCL42920 | cds-NP_116709.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:250162-251802:- | gene-YFR051C_NCIM3186 | rna-NM_001180016.3_NCIM3186 | cds-NP_116709.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:240583-242223:- | gene-YFR051C_NCYC1407 | rna-NM_001180016.3_NCYC1407 | cds-NP_116709.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:282622-284262:- | gene-YFR051C_PE2H3 | rna-NM_001180016.3_PE2H3 | cds-NP_116709.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:282170-283810:- | gene-YFR051C_PE2H4 | rna-NM_001180016.3_PE2H4 | cds-NP_116709.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:250163-251803:- | gene-YFR051C_S288C | rna-NM_001180016.3_S288C | cds-NP_116709.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000086.1:19299-20939:+ | gene-YFR051C_SA1 | rna-NM_001180016.3_SA1 | cds-NP_116709.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:240249-241889:- | gene-YFR051C_ThermosaccDry | rna-NM_001180016.3_ThermosaccDry | cds-NP_116709.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:256006-257646:- | gene-YFR051C_VR1 | rna-NM_001180016.3_VR1 | cds-NP_116709.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:170695-172335:- | gene-YFR051C_ZTW1 | rna-NM_001180016.3_ZTW1 | cds-NP_116709.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:263742-265382:- | gene-YFR051C_Sparadoxus | rna-NM_001180016.3_Sparadoxus | cds-NP_116709.3_Sparadoxus | 90.3 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |