Gene name: RET1
Reference locus (S288C): YOR207C
Gene biotype: protein_coding
Description: Dna-directed rna polymerase iii core subunit ret1; Second-largest subunit of RNA polymerase III; RNA polymerase III is responsible for the transcription of tRNA and 5S RNA genes, and other low molecular weight RNAs
Top 10 interactors (score): RPC19 (0.999); RPB10 (0.999); RPC25 (0.999); RPO31 (0.999); RPC31 (0.999); RPC53 (0.999); RPC37 (0.999); RPB5 (0.999); RPC40 (0.999); RPC82 (0.999); RPC34 (0.999); RPC11 (0.999); RPC17 (0.999); RPO26 (0.999); RPC10 (0.999); RPB8 (0.999); RPA190 (0.998); BRF1 (0.993); BDP1 (0.992); RPA135 (0.99)
Homologues (species, bitscore): POLR3B (Homo sapiens, 1433.3); Polr3b (Mus musculus, 1437.2); polr3b (Danio rerio, 1431.0); polr3b (Xenopus tropicalis, 1400.6); RpIII128 (Drosophila melanogaster, 1339.3); F09F7.3 (Caenorhabditis elegans, 1308.5); NRPC2 (Arabidopsis thaliana, 1259.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:720790-724239:- | gene-YOR207C_AKU4011 | rna-NM_001183626.1_AKU4011 | cds-NP_014850.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:122829-126278:- | gene-YOR207C_BG1 | rna-NM_001183626.1_BG1 | cds-NP_014850.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:705625-709074:- | gene-YOR207C_Bruggeman | rna-NM_001183626.1_Bruggeman | cds-NP_014850.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:706903-710352:- | gene-YOR207C_CAT1 | rna-NM_001183626.1_CAT1 | cds-NP_014850.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:703777-707226:- | gene-YOR207C_CBS1585 | rna-NM_001183626.1_CBS1585 | cds-NP_014850.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:702468-705917:- | gene-YOR207C_CBS436 | rna-NM_001183626.1_CBS436 | cds-NP_014850.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:700895-704344:- | gene-YOR207C_CBS6412 | rna-NM_001183626.1_CBS6412 | cds-NP_014850.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:709534-712983:- | gene-YOR207C_CBS6413 | rna-NM_001183626.1_CBS6413 | cds-NP_014850.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:729772-733221:- | gene-YOR207C_CENPK1137D | rna-NM_001183626.1_CENPK1137D | cds-NP_014850.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:696930-700379:- | gene-YOR207C_EthanolRed | rna-NM_001183626.1_EthanolRed | cds-NP_014850.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:702327-705776:- | gene-YOR207C_FaliES1 | rna-NM_001183626.1_FaliES1 | cds-NP_014850.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:120982-124431:+ | gene-YOR207C_JAY291 | rna-NM_001183626.1_JAY291 | cds-NP_014850.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:709587-713036:- | gene-YOR207C_MUCL30387 | rna-NM_001183626.1_MUCL30387 | cds-NP_014850.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:717004-720453:- | gene-YOR207C_MUCL30388 | rna-NM_001183626.1_MUCL30388 | cds-NP_014850.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:711106-714555:- | gene-YOR207C_MUCL39482 | rna-NM_001183626.1_MUCL39482 | cds-NP_014850.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:720690-724139:- | gene-YOR207C_MUCL42920 | rna-NM_001183626.1_MUCL42920 | cds-NP_014850.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:729897-733346:- | gene-YOR207C_NCIM3186 | rna-NM_001183626.1_NCIM3186 | cds-NP_014850.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:711204-714653:- | gene-YOR207C_NCYC1407 | rna-NM_001183626.1_NCYC1407 | cds-NP_014850.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:710602-714051:- | gene-YOR207C_PE2H3 | rna-NM_001183626.1_PE2H3 | cds-NP_014850.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:720979-724428:- | gene-YOR207C_PE2H4 | rna-NM_001183626.1_PE2H4 | cds-NP_014850.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:730008-733457:- | gene-YOR207C_S288C | rna-NM_001183626.1_S288C | cds-NP_014850.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:140009-143458:- | gene-YOR207C_SA1 | rna-NM_001183626.1_SA1 | cds-NP_014850.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:701512-704961:- | gene-YOR207C_ThermosaccDry | rna-NM_001183626.1_ThermosaccDry | cds-NP_014850.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:765043-768492:- | gene-YOR207C_VR1 | rna-NM_001183626.1_VR1 | cds-NP_014850.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:434414-437863:- | gene-YOR207C_ZTW1 | rna-NM_001183626.1_ZTW1 | cds-NP_014850.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:707367-710816:- | gene-YOR207C_Sparadoxus | rna-NM_001183626.1_Sparadoxus | cds-NP_014850.1_Sparadoxus | 92.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |