Gene name: RER1
Reference locus (S288C): YCL001W
Gene biotype: protein_coding
Description: Protein involved in retention of membrane proteins; including Sec12p, in the ER; localized to Golgi; functions as a retrieval receptor in returning membrane proteins to the ER
Top 10 interactors (score): ERD2 (0.967); MNL1 (0.96); SEC12 (0.955); MNS1 (0.954); ERV29 (0.931); CNE1 (0.919); SED4 (0.888); SEC66 (0.88); ERV41 (0.878); ALG9 (0.863); ERV46 (0.85); TLG2 (0.842); SEC27 (0.838); EMP47 (0.83); DER1 (0.822); EMP24 (0.819); SEC22 (0.818); GLO3 (0.795); SEC23 (0.783); ERV25 (0.78)
Homologues (species, bitscore): RER1 (Homo sapiens, 189.5); Rer1 (Mus musculus, 189.9); rer1 (Danio rerio, 186.0); rer1 (Xenopus tropicalis, 189.5); DmelCG11857 (Drosophila melanogaster, 190.3); rer-1 (Caenorhabditis elegans, 181.4); ATRER1A (Arabidopsis thaliana, 186.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:106633-107199:+ | gene-YCL001W_AKU4011 | rna-NM_001178651.1_AKU4011 | cds-NP_009925.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000178.1:38834-39400:- | gene-YCL001W_BG1 | rna-NM_001178651.1_BG1 | cds-NP_009925.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:101218-101784:+ | gene-YCL001W_Bruggeman | rna-NM_001178651.1_Bruggeman | cds-NP_009925.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:106368-106934:+ | gene-YCL001W_CAT1 | rna-NM_001178651.1_CAT1 | cds-NP_009925.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:107283-107849:+ | gene-YCL001W_CBS1585 | rna-NM_001178651.1_CBS1585 | cds-NP_009925.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:112199-112765:+ | gene-YCL001W_CBS436 | rna-NM_001178651.1_CBS436 | cds-NP_009925.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:94742-95308:+ | gene-YCL001W_CBS6412 | rna-NM_001178651.1_CBS6412 | cds-NP_009925.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:106590-107156:+ | gene-YCL001W_CBS6413 | rna-NM_001178651.1_CBS6413 | cds-NP_009925.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:111391-111957:+ | gene-YCL001W_CENPK1137D | rna-NM_001178651.1_CENPK1137D | cds-NP_009925.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:104652-105218:+ | gene-YCL001W_EthanolRed | rna-NM_001178651.1_EthanolRed | cds-NP_009925.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:106945-107511:+ | gene-YCL001W_FaliES1 | rna-NM_001178651.1_FaliES1 | cds-NP_009925.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000126.1:21114-21679:+ | gene-YCL001W_JAY291 | rna-NM_001178651.1_JAY291 | cds-NP_009925.1_JAY291 | 99.8 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:99656-100222:+ | gene-YCL001W_MUCL30387 | rna-NM_001178651.1_MUCL30387 | cds-NP_009925.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:99212-99778:+ | gene-YCL001W_MUCL30388 | rna-NM_001178651.1_MUCL30388 | cds-NP_009925.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:107700-108266:+ | gene-YCL001W_MUCL39482 | rna-NM_001178651.1_MUCL39482 | cds-NP_009925.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:102932-103498:+ | gene-YCL001W_MUCL42920 | rna-NM_001178651.1_MUCL42920 | cds-NP_009925.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:111548-112114:+ | gene-YCL001W_NCIM3186 | rna-NM_001178651.1_NCIM3186 | cds-NP_009925.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:108182-108748:+ | gene-YCL001W_NCYC1407 | rna-NM_001178651.1_NCYC1407 | cds-NP_009925.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:112351-112917:+ | gene-YCL001W_PE2H3 | rna-NM_001178651.1_PE2H3 | cds-NP_009925.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:112309-112875:+ | gene-YCL001W_PE2H4 | rna-NM_001178651.1_PE2H4 | cds-NP_009925.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:111916-112482:+ | gene-YCL001W_S288C | rna-NM_001178651.1_S288C | cds-NP_009925.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000073.1:38852-39418:- | gene-YCL001W_SA1 | rna-NM_001178651.1_SA1 | cds-NP_009925.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:107518-108084:+ | gene-YCL001W_ThermosaccDry | rna-NM_001178651.1_ThermosaccDry | cds-NP_009925.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:118158-118724:+ | gene-YCL001W_VR1 | rna-NM_001178651.1_VR1 | cds-NP_009925.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:106456-107022:+ | gene-YCL001W_ZTW1 | rna-NM_001178651.1_ZTW1 | cds-NP_009925.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:136694-137260:+ | gene-YCL001W_Sparadoxus | rna-NM_001178651.1_Sparadoxus | cds-NP_009925.1_Sparadoxus | 92.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |