Gene name: REH1
Reference locus (S288C): YLR387C
Gene biotype: protein_coding
Description: Cytoplasmic 60S subunit biogenesis factor; associates with pre-60S particles; similar to Rei1p and shares partially redundant function in cytoplasmic 60S subunit maturation; contains dispersed C2H2 zinc finger domains; Belongs to the REI1 family
Top 10 interactors (score): NMD3 (0.996); TIF6 (0.994); LSG1 (0.99); RPL24A (0.958); RPL10 (0.938); RPL17A (0.928); RPL35B (0.926); RPL40A (0.924); RPL4A (0.923); RPL40B (0.917); RPL23B (0.914); RPL23A (0.914); RPL35A (0.907); RPL3 (0.903); NIP7 (0.902); RPL9A (0.9); RPL31A (0.9); RPL39 (0.9); RPL22A (0.899); RPL25 (0.896)
Homologues (species, bitscore): ZNF622 (Homo sapiens, 143.7); Zfp622 (Mus musculus, 134.4); znf622 (Danio rerio, 174.9); znf622 (Xenopus tropicalis, 138.7); CG6769 (Drosophila melanogaster, 139.4); C16A3.4 (Caenorhabditis elegans, 113.2); AT4G31420 (Arabidopsis thaliana, 112.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:845911-847209:- | gene-YLR387C_AKU4011 | rna-NM_001182276.1_AKU4011 | cds-NP_013491.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:78090-79388:- | gene-YLR387C_BG1 | rna-NM_001182276.1_BG1 | cds-NP_013491.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:884217-885515:- | gene-YLR387C_Bruggeman | rna-NM_001182276.1_Bruggeman | cds-NP_013491.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:879743-881041:- | gene-YLR387C_CAT1 | rna-NM_001182276.1_CAT1 | cds-NP_013491.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:881507-882805:- | gene-YLR387C_CBS1585 | rna-NM_001182276.1_CBS1585 | cds-NP_013491.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:865148-866446:- | gene-YLR387C_CBS436 | rna-NM_001182276.1_CBS436 | cds-NP_013491.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:917548-918846:- | gene-YLR387C_CBS6412 | rna-NM_001182276.1_CBS6412 | cds-NP_013491.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:881798-883096:- | gene-YLR387C_CBS6413 | rna-NM_001182276.1_CBS6413 | cds-NP_013491.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:881188-882486:- | gene-YLR387C_CENPK1137D | rna-NM_001182276.1_CENPK1137D | cds-NP_013491.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:838454-839752:- | gene-YLR387C_EthanolRed | rna-NM_001182276.1_EthanolRed | cds-NP_013491.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:867764-869062:- | gene-YLR387C_FaliES1 | rna-NM_001182276.1_FaliES1 | cds-NP_013491.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:20922-22220:- | gene-YLR387C_JAY291 | rna-NM_001182276.1_JAY291 | cds-NP_013491.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:883082-884380:- | gene-YLR387C_MUCL30387 | rna-NM_001182276.1_MUCL30387 | cds-NP_013491.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:889168-890466:- | gene-YLR387C_MUCL30388 | rna-NM_001182276.1_MUCL30388 | cds-NP_013491.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:882727-884025:- | gene-YLR387C_MUCL39482 | rna-NM_001182276.1_MUCL39482 | cds-NP_013491.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:877384-878682:- | gene-YLR387C_MUCL42920 | rna-NM_001182276.1_MUCL42920 | cds-NP_013491.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:896348-897646:- | gene-YLR387C_NCIM3186 | rna-NM_001182276.1_NCIM3186 | cds-NP_013491.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:891907-893205:- | gene-YLR387C_NCYC1407 | rna-NM_001182276.1_NCYC1407 | cds-NP_013491.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:878301-879599:- | gene-YLR387C_PE2H3 | rna-NM_001182276.1_PE2H3 | cds-NP_013491.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:878045-879343:- | gene-YLR387C_PE2H4 | rna-NM_001182276.1_PE2H4 | cds-NP_013491.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:896374-897672:- | gene-YLR387C_S288C | rna-NM_001182276.1_S288C | cds-NP_013491.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:151015-152313:+ | gene-YLR387C_SA1 | rna-NM_001182276.1_SA1 | cds-NP_013491.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:870843-872141:- | gene-YLR387C_ThermosaccDry | rna-NM_001182276.1_ThermosaccDry | cds-NP_013491.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:883391-884689:- | gene-YLR387C_VR1 | rna-NM_001182276.1_VR1 | cds-NP_013491.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:207559-208857:- | gene-YLR387C_ZTW1 | rna-NM_001182276.1_ZTW1 | cds-NP_013491.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:856260-857576:- | gene-YLR387C_Sparadoxus | rna-NM_001182276.1_Sparadoxus | cds-NP_013491.1_Sparadoxus | 88.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |