Gene name: RED1
Reference locus (S288C): YLR263W
Gene biotype: protein_coding
Description: Protein component of the synaptonemal complex axial elements; involved in chromosome segregation during the first meiotic division; critical for coupling checkpoint signaling to SC formation; promotes interhomolog recombination by phosphorylating Hop1p; also interacts with Mec3p and Ddc1p
Top 10 interactors (score): HOP1 (0.999); MEK1 (0.996); ZIP1 (0.982); MEC1 (0.9); REC8 (0.89); DMC1 (0.886); SPO16 (0.882); SPO11 (0.87); ZIP2 (0.863); MND1 (0.836); HOP2 (0.836); SAE2 (0.836); PCH2 (0.827); SPO13 (0.822); GLC7 (0.819); GMC2 (0.797); SPO22 (0.794); REC104 (0.772); REC114 (0.766); ECM11 (0.76)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:618585-621068:+ | gene-YLR263W_AKU4011 | rna-NM_001182150.1_AKU4011 | cds-NP_013365.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:110810-113293:- | gene-YLR263W_BG1 | rna-NM_001182150.1_BG1 | cds-NP_013365.1_BG1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:652845-655328:+ | gene-YLR263W_Bruggeman | rna-NM_001182150.1_Bruggeman | cds-NP_013365.1_Bruggeman | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:652031-654514:+ | gene-YLR263W_CAT1 | rna-NM_001182150.1_CAT1 | cds-NP_013365.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:654080-656563:+ | gene-YLR263W_CBS1585 | rna-NM_001182150.1_CBS1585 | cds-NP_013365.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:638317-640800:+ | gene-YLR263W_CBS436 | rna-NM_001182150.1_CBS436 | cds-NP_013365.1_CBS436 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:617055-619538:+ | gene-YLR263W_CBS6412 | rna-NM_001182150.1_CBS6412 | cds-NP_013365.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:654376-656859:+ | gene-YLR263W_CBS6413 | rna-NM_001182150.1_CBS6413 | cds-NP_013365.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:654918-657401:+ | gene-YLR263W_CENPK1137D | rna-NM_001182150.1_CENPK1137D | cds-NP_013365.1_CENPK1137D | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:612785-615268:+ | gene-YLR263W_EthanolRed | rna-NM_001182150.1_EthanolRed | cds-NP_013365.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:641616-644099:+ | gene-YLR263W_FaliES1 | rna-NM_001182150.1_FaliES1 | cds-NP_013365.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000136.1:15292-17775:- | gene-YLR263W_JAY291 | rna-NM_001182150.1_JAY291 | cds-NP_013365.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:653702-656185:+ | gene-YLR263W_MUCL30387 | rna-NM_001182150.1_MUCL30387 | cds-NP_013365.1_MUCL30387 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:658470-660953:+ | gene-YLR263W_MUCL30388 | rna-NM_001182150.1_MUCL30388 | cds-NP_013365.1_MUCL30388 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:655061-657544:+ | gene-YLR263W_MUCL39482 | rna-NM_001182150.1_MUCL39482 | cds-NP_013365.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:649846-652329:+ | gene-YLR263W_MUCL42920 | rna-NM_001182150.1_MUCL42920 | cds-NP_013365.1_MUCL42920 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:670314-672797:+ | gene-YLR263W_NCIM3186 | rna-NM_001182150.1_NCIM3186 | cds-NP_013365.1_NCIM3186 | 94.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:642048-644531:+ | gene-YLR263W_NCYC1407 | rna-NM_001182150.1_NCYC1407 | cds-NP_013365.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:645837-648320:+ | gene-YLR263W_PE2H3 | rna-NM_001182150.1_PE2H3 | cds-NP_013365.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:645581-648064:+ | gene-YLR263W_PE2H4 | rna-NM_001182150.1_PE2H4 | cds-NP_013365.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:670340-672823:+ | gene-YLR263W_S288C | rna-NM_001182150.1_S288C | cds-NP_013365.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:15537-18020:- | gene-YLR263W_SA1 | rna-NM_001182150.1_SA1 | cds-NP_013365.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:643569-646052:+ | gene-YLR263W_ThermosaccDry | rna-NM_001182150.1_ThermosaccDry | cds-NP_013365.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:654908-657391:+ | gene-YLR263W_VR1 | rna-NM_001182150.1_VR1 | cds-NP_013365.1_VR1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:167869-170352:+ | gene-YLR263W_ZTW1 | rna-NM_001182150.1_ZTW1 | cds-NP_013365.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:629367-631892:+ | gene-YLR263W_Sparadoxus | rna-NM_001182150.1_Sparadoxus | cds-NP_013365.1_Sparadoxus | 85.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |