Gene name: REA1
Reference locus (S288C): YLR106C
Gene biotype: protein_coding
Description: Midasin; Huge dynein-related AAA-type ATPase (midasin); forms extended pre-60S particle with the Rix1 complex (Rix1p-Ipi1p-Ipi3p); acts in removal of ribosomal biogenesis factors at successive steps of pre-60S assembly and export from nucleus
Top 10 interactors (score): ARX1 (0.999); NOP7 (0.999); YTM1 (0.999); IPI1 (0.999); NOG2 (0.999); RSA4 (0.999); NOG1 (0.998); RLP24 (0.998); NUG1 (0.998); SDA1 (0.997); NSA1 (0.997); RIX7 (0.997); NSA2 (0.997); ERB1 (0.997); RIX1 (0.997); PUF6 (0.996); BUD20 (0.995); IPI3 (0.995); MRT4 (0.995); SPB1 (0.995)
Homologues (species, bitscore): MDN1 (Homo sapiens, 1980.3); Mdn1 (Mus musculus, 1945.6); mdn1 (Danio rerio, 1971.1); ENSXETP00000064094 (Xenopus tropicalis, 733.4); CG13185 (Drosophila melanogaster, 1517.7); F55F10.1 (Caenorhabditis elegans, 1322.0); AT1G67120 (Arabidopsis thaliana, 1689.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:331513-346224:- | gene-YLR106C_AKU4011 | rna-NM_001181993.1_AKU4011 | cds-NP_013207.1_AKU4011 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:294745-309477:- | gene-YLR106C_BG1 | rna-NM_001181993.1_BG1 | cds-NP_013207.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:341361-356093:- | gene-YLR106C_Bruggeman | rna-NM_001181993.1_Bruggeman | cds-NP_013207.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:341707-356439:- | gene-YLR106C_CAT1 | rna-NM_001181993.1_CAT1 | cds-NP_013207.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:338655-353366:- | gene-YLR106C_CBS1585 | rna-NM_001181993.1_CBS1585 | cds-NP_013207.1_CBS1585 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:329215-343947:- | gene-YLR106C_CBS436 | rna-NM_001181993.1_CBS436 | cds-NP_013207.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:337074-351785:- | gene-YLR106C_CBS6412 | rna-NM_001181993.1_CBS6412 | cds-NP_013207.1_CBS6412 | 99.4 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:338921-353632:- | gene-YLR106C_CBS6413 | rna-NM_001181993.1_CBS6413 | cds-NP_013207.1_CBS6413 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:334027-348759:- | gene-YLR106C_CENPK1137D | rna-NM_001181993.1_CENPK1137D | cds-NP_013207.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:331073-345784:- | gene-YLR106C_EthanolRed | rna-NM_001181993.1_EthanolRed | cds-NP_013207.1_EthanolRed | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:330893-345604:- | gene-YLR106C_FaliES1 | rna-NM_001181993.1_FaliES1 | cds-NP_013207.1_FaliES1 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:105815-120549:- | gene-YLR106C_JAY291 | rna-NM_001181993.1_JAY291 | cds-NP_013207.1_JAY291 | 99.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:338736-353468:- | gene-YLR106C_MUCL30387 | rna-NM_001181993.1_MUCL30387 | cds-NP_013207.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:346404-361136:- | gene-YLR106C_MUCL30388 | rna-NM_001181993.1_MUCL30388 | cds-NP_013207.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:339164-353875:- | gene-YLR106C_MUCL39482 | rna-NM_001181993.1_MUCL39482 | cds-NP_013207.1_MUCL39482 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:339066-353798:- | gene-YLR106C_MUCL42920 | rna-NM_001181993.1_MUCL42920 | cds-NP_013207.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:348980-363712:- | gene-YLR106C_NCIM3186 | rna-NM_001181993.1_NCIM3186 | cds-NP_013207.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:331226-345937:- | gene-YLR106C_NCYC1407 | rna-NM_001181993.1_NCYC1407 | cds-NP_013207.1_NCYC1407 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:336980-351712:- | gene-YLR106C_PE2H3 | rna-NM_001181993.1_PE2H3 | cds-NP_013207.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:336721-351453:- | gene-YLR106C_PE2H4 | rna-NM_001181993.1_PE2H4 | cds-NP_013207.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:349006-363738:- | gene-YLR106C_S288C | rna-NM_001181993.1_S288C | cds-NP_013207.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:10350-25082:+ | gene-YLR106C_SA1 | rna-NM_001181993.1_SA1 | cds-NP_013207.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:331066-345777:- | gene-YLR106C_ThermosaccDry | rna-NM_001181993.1_ThermosaccDry | cds-NP_013207.1_ThermosaccDry | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:345221-359953:- | gene-YLR106C_VR1 | rna-NM_001181993.1_VR1 | cds-NP_013207.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:330532-345263:- | gene-YLR106C_ZTW1 | rna-NM_001181993.1_ZTW1 | cds-NP_013207.1_ZTW1 | 99.5 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:339235-353973:- | gene-YLR106C_Sparadoxus | rna-NM_001181993.1_Sparadoxus | cds-NP_013207.1_Sparadoxus | 88.8 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |