RDT1 (YCL054W-A)

Gene profile

Gene name: RDT1
Reference locus (S288C): YCL054W-A
Gene biotype: protein_coding

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005297.1:32191-32277:+ gene-YCL054W-A_AKU4011 rna-NM_001305014.1_AKU4011 cds-NP_001291943.1_AKU4011 100.0 100.0 Mismatch 1 1 1 True True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000086.1:13549-13635:- gene-YCL054W-A_BG1 rna-NM_001305014.1_BG1 cds-NP_001291943.1_BG1 100.0 100.0 Mismatch 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000311.1:26-112:+ gene-YCL054W-A_2_Bruggeman Unknown Unknown 100.0 100.0 Mismatch 3 3 1 Unknown Unknown Unknown Unknown Unknown
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000338.1:238-324:+ gene-YCL054W-A_1_Bruggeman Unknown Unknown 100.0 100.0 Mismatch 3 2 1 Unknown Unknown Unknown Unknown Unknown
Bruggeman GCA_001738585.1 Bread Not Applicable CM005505.1:20057-20143:+ gene-YCL054W-A_Bruggeman rna-NM_001305014.1_Bruggeman cds-NP_001291943.1_Bruggeman 100.0 100.0 Mismatch 3 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005521.1:32061-32147:+ gene-YCL054W-A_CAT1 rna-NM_001305014.1_CAT1 cds-NP_001291943.1_CAT1 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005361.1:32874-32960:+ gene-YCL054W-A_CBS1585 rna-NM_001305014.1_CBS1585 cds-NP_001291943.1_CBS1585 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005345.1:31434-31519:+ gene-YCL054W-A_CBS436 rna-NM_001305014.1_CBS436 cds-NP_001291943.1_CBS436 98.8 98.8 Mismatch 1 1 0 False False False True False
CBS6412 GCA_001738345.1 Sake Asia CM005329.1:20650-20736:+ gene-YCL054W-A_CBS6412 rna-NM_001305014.1_CBS6412 cds-NP_001291943.1_CBS6412 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005313.1:31668-31754:+ gene-YCL054W-A_CBS6413 rna-NM_001305014.1_CBS6413 cds-NP_001291943.1_CBS6413 100.0 100.0 Mismatch 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001524.1:30484-30570:+ gene-YCL054W-A_CENPK1137D rna-NM_001305014.1_CENPK1137D cds-NP_001291943.1_CENPK1137D 100.0 100.0 Mismatch 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005473.1:30424-30510:+ gene-YCL054W-A_EthanolRed rna-NM_001305014.1_EthanolRed cds-NP_001291943.1_EthanolRed 100.0 100.0 Mismatch 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005537.1:31187-31273:+ gene-YCL054W-A_FaliES1 rna-NM_001305014.1_FaliES1 cds-NP_001291943.1_FaliES1 100.0 100.0 Mismatch 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000225.1:53065-53151:- gene-YCL054W-A_JAY291 rna-NM_001305014.1_JAY291 cds-NP_001291943.1_JAY291 100.0 100.0 Mismatch 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005409.1:18658-18744:+ gene-YCL054W-A_MUCL30387 rna-NM_001305014.1_MUCL30387 cds-NP_001291943.1_MUCL30387 96.5 100.0 Mismatch 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005441.1:18919-19005:+ gene-YCL054W-A_MUCL30388 rna-NM_001305014.1_MUCL30388 cds-NP_001291943.1_MUCL30388 100.0 100.0 Mismatch 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005281.1:33261-33347:+ gene-YCL054W-A_MUCL39482 rna-NM_001305014.1_MUCL39482 cds-NP_001291943.1_MUCL39482 100.0 100.0 Mismatch 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005425.1:19451-19537:+ gene-YCL054W-A_MUCL42920 rna-NM_001305014.1_MUCL42920 cds-NP_001291943.1_MUCL42920 100.0 100.0 Mismatch 1 1 1 True True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005265.1:33583-33669:+ gene-YCL054W-A_NCYC1407 rna-NM_001305014.1_NCYC1407 cds-NP_001291943.1_NCYC1407 100.0 100.0 Mismatch 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994142.1:31356-31442:+ gene-YCL054W-A_PE2H3 rna-NM_001305014.1_PE2H3 cds-NP_001291943.1_PE2H3 100.0 100.0 Mismatch 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999874.1:31313-31399:+ gene-YCL054W-A_PE2H4 rna-NM_001305014.1_PE2H4 cds-NP_001291943.1_PE2H4 100.0 100.0 Mismatch 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001135.5:30910-30996:+ gene-YCL054W-A_S288C rna-NM_001305014.1_S288C cds-NP_001291943.1_S288C 100.0 100.0 Mismatch 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000061.1:18035-18121:+ gene-YCL054W-A_SA1 rna-NM_001305014.1_SA1 cds-NP_001291943.1_SA1 100.0 100.0 Mismatch 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005489.1:31505-31591:+ gene-YCL054W-A_ThermosaccDry rna-NM_001305014.1_ThermosaccDry cds-NP_001291943.1_ThermosaccDry 100.0 100.0 Mismatch 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005457.1:37841-37927:+ gene-YCL054W-A_VR1 rna-NM_001305014.1_VR1 cds-NP_001291943.1_VR1 100.0 100.0 Mismatch 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000004.1:31729-31815:+ gene-YCL054W-A_ZTW1 rna-NM_001305014.1_ZTW1 cds-NP_001291943.1_ZTW1 96.5 100.0 Mismatch 1 1 1 False True False False False

Additional files