Gene name: RDS3
Reference locus (S288C): YPR094W
Gene biotype: protein_coding
Description: Phd finger-like domain-containing protein 5a; Pre-mRNA-splicing factor RDS3; Component of the SF3b subcomplex of the U2 snRNP; zinc cluster protein involved in pre-mRNA splicing and cycloheximide resistance
Top 10 interactors (score): MSL1 (0.999); RSE1 (0.999); LEA1 (0.999); CUS1 (0.999); PRP11 (0.999); HSH49 (0.999); HSH155 (0.999); PRP21 (0.999); SMD3 (0.999); CEF1 (0.999); IST3 (0.999); YSF3 (0.999); SME1 (0.999); SNU66 (0.999); BUD31 (0.998); LSM5 (0.996); SMX2 (0.996); YHC1 (0.996); SMD1 (0.995); PRP31 (0.995)
Homologues (species, bitscore): PHF5A (Homo sapiens, 120.2); Phf5a (Mus musculus, 120.2); phf5a (Danio rerio, 120.2); phf5a (Xenopus tropicalis, 120.2); CG9548 (Drosophila melanogaster, 117.1); phf-5 (Caenorhabditis elegans, 123.6); AT1G07170 (Arabidopsis thaliana, 125.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:692317-692640:+ | gene-YPR094W_AKU4011 | rna-NM_001184191.1_AKU4011 | cds-NP_015419.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:205037-205360:- | gene-YPR094W_BG1 | rna-NM_001184191.1_BG1 | cds-NP_015419.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:769996-770319:+ | gene-YPR094W_Bruggeman | rna-NM_001184191.1_Bruggeman | cds-NP_015419.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:814296-814619:+ | gene-YPR094W_CAT1 | rna-NM_001184191.1_CAT1 | cds-NP_015419.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:696244-696567:+ | gene-YPR094W_CBS1585 | rna-NM_001184191.1_CBS1585 | cds-NP_015419.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:710872-711195:+ | gene-YPR094W_CBS436 | rna-NM_001184191.1_CBS436 | cds-NP_015419.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:699379-699702:+ | gene-YPR094W_CBS6412 | rna-NM_001184191.1_CBS6412 | cds-NP_015419.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:693201-693524:+ | gene-YPR094W_CBS6413 | rna-NM_001184191.1_CBS6413 | cds-NP_015419.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:720615-720938:+ | gene-YPR094W_CENPK1137D | rna-NM_001184191.1_CENPK1137D | cds-NP_015419.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1019315-1019638:+ | gene-YPR094W_EthanolRed | rna-NM_001184191.1_EthanolRed | cds-NP_015419.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:698148-698471:+ | gene-YPR094W_FaliES1 | rna-NM_001184191.1_FaliES1 | cds-NP_015419.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000094.1:20041-20364:+ | gene-YPR094W_JAY291 | rna-NM_001184191.1_JAY291 | cds-NP_015419.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:711254-711577:+ | gene-YPR094W_MUCL30387 | rna-NM_001184191.1_MUCL30387 | cds-NP_015419.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:709944-710267:+ | gene-YPR094W_MUCL30388 | rna-NM_001184191.1_MUCL30388 | cds-NP_015419.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:689249-689572:+ | gene-YPR094W_MUCL39482 | rna-NM_001184191.1_MUCL39482 | cds-NP_015419.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:752095-752418:+ | gene-YPR094W_MUCL42920 | rna-NM_001184191.1_MUCL42920 | cds-NP_015419.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:720620-720943:+ | gene-YPR094W_NCIM3186 | rna-NM_001184191.1_NCIM3186 | cds-NP_015419.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:697675-697998:+ | gene-YPR094W_NCYC1407 | rna-NM_001184191.1_NCYC1407 | cds-NP_015419.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:704077-704400:+ | gene-YPR094W_PE2H3 | rna-NM_001184191.1_PE2H3 | cds-NP_015419.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:703725-704048:+ | gene-YPR094W_PE2H4 | rna-NM_001184191.1_PE2H4 | cds-NP_015419.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:720637-720960:+ | gene-YPR094W_S288C | rna-NM_001184191.1_S288C | cds-NP_015419.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:18755-19078:+ | gene-YPR094W_SA1 | rna-NM_001184191.1_SA1 | cds-NP_015419.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:697923-698246:+ | gene-YPR094W_ThermosaccDry | rna-NM_001184191.1_ThermosaccDry | cds-NP_015419.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:714566-714889:+ | gene-YPR094W_VR1 | rna-NM_001184191.1_VR1 | cds-NP_015419.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:697142-697465:+ | gene-YPR094W_ZTW1 | rna-NM_001184191.1_ZTW1 | cds-NP_015419.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:697885-698208:+ | gene-YPR094W_Sparadoxus | rna-NM_001184191.1_Sparadoxus | cds-NP_015419.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |