Gene name: RCY1
Reference locus (S288C): YJL204C
Gene biotype: protein_coding
Description: Recyclin-1; F-box protein involved in recycling endocytosed proteins; involved in recycling plasma membrane proteins internalized by endocytosis; localized to sites of polarized growth; direct interaction with C-terminal cytoplasmic region of Drs2p plays an important role for Drs2p function in endocytic recycling pathway
Top 10 interactors (score): SKP1 (0.998); EXO70 (0.969); SEC5 (0.967); SEC15 (0.959); SEC8 (0.955); EXO84 (0.955); YPT31 (0.95); SEC6 (0.945); DRS2 (0.93); SNC1 (0.929); YPT32 (0.92); CDC50 (0.915); CDC53 (0.88); ARF3 (0.858); LAA1 (0.836); SEC10 (0.83); GEA2 (0.812); MAS2 (0.808); SNX4 (0.784); SEC4 (0.776)
Homologues (species, bitscore): EXOC5 (Homo sapiens, 55.1); Exoc5 (Mus musculus, 53.5); exoc5 (Xenopus tropicalis, 54.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:39031-41553:- | gene-YJL204C_AKU4011 | rna-NM_001181637.1_AKU4011 | cds-NP_012331.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000181.1:16297-18819:- | gene-YJL204C_BG1 | rna-NM_001181637.1_BG1 | cds-NP_012331.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:50831-53353:- | gene-YJL204C_Bruggeman | rna-NM_001181637.1_Bruggeman | cds-NP_012331.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:53576-56098:- | gene-YJL204C_CAT1 | rna-NM_001181637.1_CAT1 | cds-NP_012331.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:44661-47183:- | gene-YJL204C_CBS1585 | rna-NM_001181637.1_CBS1585 | cds-NP_012331.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:69400-71922:- | gene-YJL204C_CBS436 | rna-NM_001181637.1_CBS436 | cds-NP_012331.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:41144-43666:- | gene-YJL204C_CBS6412 | rna-NM_001181637.1_CBS6412 | cds-NP_012331.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:42140-44662:- | gene-YJL204C_CBS6413 | rna-NM_001181637.1_CBS6413 | cds-NP_012331.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:33090-35612:- | gene-YJL204C_CENPK1137D | rna-NM_001181637.1_CENPK1137D | cds-NP_012331.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:43328-45850:- | gene-YJL204C_EthanolRed | rna-NM_001181637.1_EthanolRed | cds-NP_012331.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:48605-51127:- | gene-YJL204C_FaliES1 | rna-NM_001181637.1_FaliES1 | cds-NP_012331.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000301.1:39751-42273:- | gene-YJL204C_JAY291 | rna-NM_001181637.1_JAY291 | cds-NP_012331.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:52564-55086:- | gene-YJL204C_MUCL30387 | rna-NM_001181637.1_MUCL30387 | cds-NP_012331.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:48719-51241:- | gene-YJL204C_MUCL30388 | rna-NM_001181637.1_MUCL30388 | cds-NP_012331.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:43402-45924:- | gene-YJL204C_MUCL39482 | rna-NM_001181637.1_MUCL39482 | cds-NP_012331.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:48005-50527:- | gene-YJL204C_MUCL42920 | rna-NM_001181637.1_MUCL42920 | cds-NP_012331.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:50608-53130:- | gene-YJL204C_NCIM3186 | rna-NM_001181637.1_NCIM3186 | cds-NP_012331.1_NCIM3186 | 96.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:42017-44539:- | gene-YJL204C_NCYC1407 | rna-NM_001181637.1_NCYC1407 | cds-NP_012331.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:54697-57219:- | gene-YJL204C_PE2H3 | rna-NM_001181637.1_PE2H3 | cds-NP_012331.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:48585-51107:- | gene-YJL204C_PE2H4 | rna-NM_001181637.1_PE2H4 | cds-NP_012331.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:50629-53151:- | gene-YJL204C_S288C | rna-NM_001181637.1_S288C | cds-NP_012331.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:100743-103265:+ | gene-YJL204C_SA1 | rna-NM_001181637.1_SA1 | cds-NP_012331.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:41800-44322:- | gene-YJL204C_ThermosaccDry | rna-NM_001181637.1_ThermosaccDry | cds-NP_012331.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:48655-51177:- | gene-YJL204C_VR1 | rna-NM_001181637.1_VR1 | cds-NP_012331.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:29379-31901:- | gene-YJL204C_ZTW1 | rna-NM_001181637.1_ZTW1 | cds-NP_012331.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:53539-56061:- | gene-YJL204C_Sparadoxus | rna-NM_001181637.1_Sparadoxus | cds-NP_012331.1_Sparadoxus | 89.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |