Gene name: RCR2
Reference locus (S288C): YDR003W
Gene biotype: protein_coding
Description: Vacuolar protein; presumably functions within the endosomal-vacuolar trafficking pathway, affecting events that determine whether plasma membrane proteins are degraded or routed to the plasma membrane; RCR2 has a paralog, RCR1, that arose from the whole genome duplication
Top 10 interactors (score): SHR3 (0.713); IVY1 (0.711); SSH4 (0.699); FRE6 (0.674); GGA2 (0.654); CSR2 (0.587); OPT2 (0.573); YEL074W (0.565); RSP5 (0.544); USO1 (0.525); VPS25 (0.487)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:439373-440005:+ | gene-YDR003W_AKU4011 | rna-NM_001180311.3_AKU4011 | cds-NP_010286.3_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:109146-109778:- | gene-YDR003W_BG1 | rna-NM_001180311.3_BG1 | cds-NP_010286.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:459979-460611:+ | gene-YDR003W_Bruggeman | rna-NM_001180311.3_Bruggeman | cds-NP_010286.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:452824-453456:+ | gene-YDR003W_CAT1 | rna-NM_001180311.3_CAT1 | cds-NP_010286.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:436585-437217:+ | gene-YDR003W_CBS1585 | rna-NM_001180311.3_CBS1585 | cds-NP_010286.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:453354-453986:+ | gene-YDR003W_CBS436 | rna-NM_001180311.3_CBS436 | cds-NP_010286.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:433832-434464:+ | gene-YDR003W_CBS6412 | rna-NM_001180311.3_CBS6412 | cds-NP_010286.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:455523-456155:+ | gene-YDR003W_CBS6413 | rna-NM_001180311.3_CBS6413 | cds-NP_010286.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:452985-453617:+ | gene-YDR003W_CENPK1137D | rna-NM_001180311.3_CENPK1137D | cds-NP_010286.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:448204-448836:+ | gene-YDR003W_EthanolRed | rna-NM_001180311.3_EthanolRed | cds-NP_010286.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:454375-455007:+ | gene-YDR003W_FaliES1 | rna-NM_001180311.3_FaliES1 | cds-NP_010286.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000442.1:17038-17670:- | gene-YDR003W_JAY291 | rna-NM_001180311.3_JAY291 | cds-NP_010286.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:453852-454484:+ | gene-YDR003W_MUCL30387 | rna-NM_001180311.3_MUCL30387 | cds-NP_010286.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:444312-444944:+ | gene-YDR003W_MUCL30388 | rna-NM_001180311.3_MUCL30388 | cds-NP_010286.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:437954-438586:+ | gene-YDR003W_MUCL39482 | rna-NM_001180311.3_MUCL39482 | cds-NP_010286.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:359385-360017:+ | gene-YDR003W_MUCL42920 | rna-NM_001180311.3_MUCL42920 | cds-NP_010286.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:454045-454677:+ | gene-YDR003W_NCIM3186 | rna-NM_001180311.3_NCIM3186 | cds-NP_010286.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:436876-437508:+ | gene-YDR003W_NCYC1407 | rna-NM_001180311.3_NCYC1407 | cds-NP_010286.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:452505-453137:+ | gene-YDR003W_PE2H3 | rna-NM_001180311.3_PE2H3 | cds-NP_010286.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:451796-452428:+ | gene-YDR003W_PE2H4 | rna-NM_001180311.3_PE2H4 | cds-NP_010286.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:454122-454754:+ | gene-YDR003W_S288C | rna-NM_001180311.3_S288C | cds-NP_010286.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000099.1:17213-17845:- | gene-YDR003W_SA1 | rna-NM_001180311.3_SA1 | cds-NP_010286.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:453854-454486:+ | gene-YDR003W_ThermosaccDry | rna-NM_001180311.3_ThermosaccDry | cds-NP_010286.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:458294-458926:+ | gene-YDR003W_VR1 | rna-NM_001180311.3_VR1 | cds-NP_010286.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:451751-452384:+ | gene-YDR003W_ZTW1 | rna-NM_001180311.3_ZTW1 | cds-NP_010286.3_ZTW1 | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:456079-456711:+ | gene-YDR003W_Sparadoxus | rna-NM_001180311.3_Sparadoxus | cds-NP_010286.3_Sparadoxus | 91.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |