RCR1 (YBR005W)


Gene profile

Gene name: RCR1
Reference locus (S288C): YBR005W
Gene biotype: protein_coding

Description: Protein of the ER membrane involved in cell wall chitin deposition; may function in the endosomal-vacuolar trafficking pathway, helping determine whether plasma membrane proteins are degraded or routed to the plasma membrane; RCR1 has a paralog, RCR2, that arose from the whole genome duplication

Top 10 interactors (score): MNC1 (0.84); RSP5 (0.814); YOR385W (0.766); CMK2 (0.746); NCW2 (0.711); VFA1 (0.69); DIA1 (0.665); CSI2 (0.611); EMP70 (0.61); SNA4 (0.594); VAB2 (0.574); KRE9 (0.573); PKR1 (0.561); YPS5 (0.557); SHR3 (0.532); SSH4 (0.525); PFA3 (0.523); PUN1 (0.505); SDP1 (0.499); RCN2 (0.487)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005296.1:234293-234934:+ gene-YBR005W_AKU4011 rna-NM_001178353.1_AKU4011 cds-NP_009559.1_AKU4011 99.8 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000179.1:224403-225044:+ gene-YBR005W_BG1 rna-NM_001178353.1_BG1 cds-NP_009559.1_BG1 99.5 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005504.1:234997-235638:+ gene-YBR005W_Bruggeman rna-NM_001178353.1_Bruggeman cds-NP_009559.1_Bruggeman 99.3 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005520.1:237285-237926:+ gene-YBR005W_CAT1 rna-NM_001178353.1_CAT1 cds-NP_009559.1_CAT1 99.5 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005360.1:226331-226972:+ gene-YBR005W_CBS1585 rna-NM_001178353.1_CBS1585 cds-NP_009559.1_CBS1585 99.8 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005344.1:234575-235216:+ gene-YBR005W_CBS436 rna-NM_001178353.1_CBS436 cds-NP_009559.1_CBS436 99.5 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005328.1:324833-325474:+ gene-YBR005W_CBS6412 rna-NM_001178353.1_CBS6412 cds-NP_009559.1_CBS6412 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005312.1:231696-232337:+ gene-YBR005W_CBS6413 rna-NM_001178353.1_CBS6413 cds-NP_009559.1_CBS6413 99.6 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001523.1:245594-246235:+ gene-YBR005W_CENPK1137D rna-NM_001178353.1_CENPK1137D cds-NP_009559.1_CENPK1137D 99.5 100.0 Verified 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005472.1:361290-361931:+ gene-YBR005W_EthanolRed rna-NM_001178353.1_EthanolRed cds-NP_009559.1_EthanolRed 99.8 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005536.1:249386-250027:+ gene-YBR005W_FaliES1 rna-NM_001178353.1_FaliES1 cds-NP_009559.1_FaliES1 99.8 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000048.1:47570-48211:- gene-YBR005W_JAY291 rna-NM_001178353.1_JAY291 cds-NP_009559.1_JAY291 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005408.1:235352-235993:+ gene-YBR005W_MUCL30387 rna-NM_001178353.1_MUCL30387 cds-NP_009559.1_MUCL30387 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005440.1:235295-235936:+ gene-YBR005W_MUCL30388 rna-NM_001178353.1_MUCL30388 cds-NP_009559.1_MUCL30388 99.3 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005280.1:226312-226953:+ gene-YBR005W_MUCL39482 rna-NM_001178353.1_MUCL39482 cds-NP_009559.1_MUCL39482 99.8 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005424.1:233754-234395:+ gene-YBR005W_MUCL42920 rna-NM_001178353.1_MUCL42920 cds-NP_009559.1_MUCL42920 99.5 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011811.1:245703-246344:+ gene-YBR005W_NCIM3186 rna-NM_001178353.1_NCIM3186 cds-NP_009559.1_NCIM3186 99.5 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005264.1:227487-228128:+ gene-YBR005W_NCYC1407 rna-NM_001178353.1_NCYC1407 cds-NP_009559.1_NCYC1407 99.8 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994141.1:239648-240289:+ gene-YBR005W_PE2H3 rna-NM_001178353.1_PE2H3 cds-NP_009559.1_PE2H3 99.5 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999873.1:237316-237957:+ gene-YBR005W_PE2H4 rna-NM_001178353.1_PE2H4 cds-NP_009559.1_PE2H4 99.5 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001134.8:245906-246547:+ gene-YBR005W_S288C rna-NM_001178353.1_S288C cds-NP_009559.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000037.1:56223-56864:- gene-YBR005W_SA1 rna-NM_001178353.1_SA1 cds-NP_009559.1_SA1 99.5 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005488.1:249095-249736:+ gene-YBR005W_ThermosaccDry rna-NM_001178353.1_ThermosaccDry cds-NP_009559.1_ThermosaccDry 99.8 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005456.1:230991-231632:+ gene-YBR005W_VR1 rna-NM_001178353.1_VR1 cds-NP_009559.1_VR1 99.6 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000003.1:225077-225718:+ gene-YBR005W_ZTW1 rna-NM_001178353.1_ZTW1 cds-NP_009559.1_ZTW1 99.8 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047488.1:260780-261421:+ gene-YBR005W_Sparadoxus rna-NM_001178353.1_Sparadoxus cds-NP_009559.1_Sparadoxus 87.8 100.0 Verified 1 1 1 False True False False False

Additional files