Gene name: RCR1
Reference locus (S288C): YBR005W
Gene biotype: protein_coding
Description: Protein of the ER membrane involved in cell wall chitin deposition; may function in the endosomal-vacuolar trafficking pathway, helping determine whether plasma membrane proteins are degraded or routed to the plasma membrane; RCR1 has a paralog, RCR2, that arose from the whole genome duplication
Top 10 interactors (score): MNC1 (0.84); RSP5 (0.814); YOR385W (0.766); CMK2 (0.746); NCW2 (0.711); VFA1 (0.69); DIA1 (0.665); CSI2 (0.611); EMP70 (0.61); SNA4 (0.594); VAB2 (0.574); KRE9 (0.573); PKR1 (0.561); YPS5 (0.557); SHR3 (0.532); SSH4 (0.525); PFA3 (0.523); PUN1 (0.505); SDP1 (0.499); RCN2 (0.487)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:234293-234934:+ | gene-YBR005W_AKU4011 | rna-NM_001178353.1_AKU4011 | cds-NP_009559.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:224403-225044:+ | gene-YBR005W_BG1 | rna-NM_001178353.1_BG1 | cds-NP_009559.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:234997-235638:+ | gene-YBR005W_Bruggeman | rna-NM_001178353.1_Bruggeman | cds-NP_009559.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:237285-237926:+ | gene-YBR005W_CAT1 | rna-NM_001178353.1_CAT1 | cds-NP_009559.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:226331-226972:+ | gene-YBR005W_CBS1585 | rna-NM_001178353.1_CBS1585 | cds-NP_009559.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:234575-235216:+ | gene-YBR005W_CBS436 | rna-NM_001178353.1_CBS436 | cds-NP_009559.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:324833-325474:+ | gene-YBR005W_CBS6412 | rna-NM_001178353.1_CBS6412 | cds-NP_009559.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:231696-232337:+ | gene-YBR005W_CBS6413 | rna-NM_001178353.1_CBS6413 | cds-NP_009559.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:245594-246235:+ | gene-YBR005W_CENPK1137D | rna-NM_001178353.1_CENPK1137D | cds-NP_009559.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:361290-361931:+ | gene-YBR005W_EthanolRed | rna-NM_001178353.1_EthanolRed | cds-NP_009559.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:249386-250027:+ | gene-YBR005W_FaliES1 | rna-NM_001178353.1_FaliES1 | cds-NP_009559.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:47570-48211:- | gene-YBR005W_JAY291 | rna-NM_001178353.1_JAY291 | cds-NP_009559.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:235352-235993:+ | gene-YBR005W_MUCL30387 | rna-NM_001178353.1_MUCL30387 | cds-NP_009559.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:235295-235936:+ | gene-YBR005W_MUCL30388 | rna-NM_001178353.1_MUCL30388 | cds-NP_009559.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:226312-226953:+ | gene-YBR005W_MUCL39482 | rna-NM_001178353.1_MUCL39482 | cds-NP_009559.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:233754-234395:+ | gene-YBR005W_MUCL42920 | rna-NM_001178353.1_MUCL42920 | cds-NP_009559.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:245703-246344:+ | gene-YBR005W_NCIM3186 | rna-NM_001178353.1_NCIM3186 | cds-NP_009559.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:227487-228128:+ | gene-YBR005W_NCYC1407 | rna-NM_001178353.1_NCYC1407 | cds-NP_009559.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:239648-240289:+ | gene-YBR005W_PE2H3 | rna-NM_001178353.1_PE2H3 | cds-NP_009559.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:237316-237957:+ | gene-YBR005W_PE2H4 | rna-NM_001178353.1_PE2H4 | cds-NP_009559.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:245906-246547:+ | gene-YBR005W_S288C | rna-NM_001178353.1_S288C | cds-NP_009559.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000037.1:56223-56864:- | gene-YBR005W_SA1 | rna-NM_001178353.1_SA1 | cds-NP_009559.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:249095-249736:+ | gene-YBR005W_ThermosaccDry | rna-NM_001178353.1_ThermosaccDry | cds-NP_009559.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:230991-231632:+ | gene-YBR005W_VR1 | rna-NM_001178353.1_VR1 | cds-NP_009559.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:225077-225718:+ | gene-YBR005W_ZTW1 | rna-NM_001178353.1_ZTW1 | cds-NP_009559.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:260780-261421:+ | gene-YBR005W_Sparadoxus | rna-NM_001178353.1_Sparadoxus | cds-NP_009559.1_Sparadoxus | 87.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |