Gene name: RCO1
Reference locus (S288C): YMR075W
Gene biotype: protein_coding
Description: Transcriptional regulatory protein RCO1; Essential component of the Rpd3S histone deacetylase complex; interacts with Eaf3p
Top 10 interactors (score): EAF3 (0.999); SIN3 (0.999); RPD3 (0.999); UME1 (0.998); SDS3 (0.994); PHO23 (0.994); SET2 (0.987); RXT2 (0.983); HOS2 (0.981); HAT2 (0.981); JHD2 (0.977); CTI6 (0.977); SAP30 (0.977); UME6 (0.974); DEP1 (0.97); RXT3 (0.97); HHT2 (0.959); HHT1 (0.946); ASH1 (0.945); ECM5 (0.931)
Homologues (species, bitscore): PHF21A (Homo sapiens, 68.9); Phf12 (Mus musculus, 67.4); phf21ab (Danio rerio, 70.9); phf12 (Xenopus tropicalis, 67.0); CG3815 (Drosophila melanogaster, 75.1); let-418 (Caenorhabditis elegans, 63.2); AT1G05380 (Arabidopsis thaliana, 63.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:451687-453741:+ | gene-YMR075W_AKU4011 | rna-NM_001182574.1_AKU4011 | cds-NP_013791.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:89042-91096:- | gene-YMR075W_BG1 | rna-NM_001182574.1_BG1 | cds-NP_013791.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:393838-395892:+ | gene-YMR075W_Bruggeman | rna-NM_001182574.1_Bruggeman | cds-NP_013791.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:394201-396255:+ | gene-YMR075W_CAT1 | rna-NM_001182574.1_CAT1 | cds-NP_013791.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:384630-386681:+ | gene-YMR075W_CBS1585 | rna-NM_001182574.1_CBS1585 | cds-NP_013791.1_CBS1585 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:390183-392237:+ | gene-YMR075W_CBS436 | rna-NM_001182574.1_CBS436 | cds-NP_013791.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:497703-499757:+ | gene-YMR075W_CBS6412 | rna-NM_001182574.1_CBS6412 | cds-NP_013791.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:383887-385938:+ | gene-YMR075W_CBS6413 | rna-NM_001182574.1_CBS6413 | cds-NP_013791.1_CBS6413 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:408088-410142:+ | gene-YMR075W_CENPK1137D | rna-NM_001182574.1_CENPK1137D | cds-NP_013791.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:384492-386546:+ | gene-YMR075W_EthanolRed | rna-NM_001182574.1_EthanolRed | cds-NP_013791.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:387658-389712:+ | gene-YMR075W_FaliES1 | rna-NM_001182574.1_FaliES1 | cds-NP_013791.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:47243-49297:- | gene-YMR075W_JAY291 | rna-NM_001182574.1_JAY291 | cds-NP_013791.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:389574-391628:+ | gene-YMR075W_MUCL30387 | rna-NM_001182574.1_MUCL30387 | cds-NP_013791.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:394258-396312:+ | gene-YMR075W_MUCL30388 | rna-NM_001182574.1_MUCL30388 | cds-NP_013791.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:384918-386969:+ | gene-YMR075W_MUCL39482 | rna-NM_001182574.1_MUCL39482 | cds-NP_013791.1_MUCL39482 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:391575-393629:+ | gene-YMR075W_MUCL42920 | rna-NM_001182574.1_MUCL42920 | cds-NP_013791.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:413936-415990:+ | gene-YMR075W_NCIM3186 | rna-NM_001182574.1_NCIM3186 | cds-NP_013791.1_NCIM3186 | 88.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:384830-386884:+ | gene-YMR075W_NCYC1407 | rna-NM_001182574.1_NCYC1407 | cds-NP_013791.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:390782-392836:+ | gene-YMR075W_PE2H3 | rna-NM_001182574.1_PE2H3 | cds-NP_013791.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:396877-398931:+ | gene-YMR075W_PE2H4 | rna-NM_001182574.1_PE2H4 | cds-NP_013791.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:413982-416036:+ | gene-YMR075W_S288C | rna-NM_001182574.1_S288C | cds-NP_013791.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:134133-136187:- | gene-YMR075W_SA1 | rna-NM_001182574.1_SA1 | cds-NP_013791.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:385461-387515:+ | gene-YMR075W_ThermosaccDry | rna-NM_001182574.1_ThermosaccDry | cds-NP_013791.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:397366-399420:+ | gene-YMR075W_VR1 | rna-NM_001182574.1_VR1 | cds-NP_013791.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:397281-399335:+ | gene-YMR075W_Sparadoxus | rna-NM_001182574.1_Sparadoxus | cds-NP_013791.1_Sparadoxus | 88.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |