Gene name: RCL1
Reference locus (S288C): YOL010W
Gene biotype: protein_coding
Description: RNA 3'-terminal phosphate cyclase-like protein; Endonuclease that cleaves pre-rRNA at site A2 for 18S rRNA biogenesis; subunit of U3-containing 90S preribosome processome complex involved in small ribosomal subunit assembly; stimulates Bms1p GTPase and U3 binding activity; similar to RNA cyclase-like proteins but no cyclase activity detected
Top 10 interactors (score): UTP21 (0.999); KRR1 (0.999); FCF1 (0.999); ENP1 (0.999); UTP4 (0.999); UTP6 (0.999); BFR2 (0.999); RRP5 (0.999); BMS1 (0.999); EMG1 (0.999); UTP22 (0.999); MPP10 (0.999); KRE33 (0.999); SOF1 (0.999); NOP14 (0.999); UTP7 (0.999); UTP10 (0.999); UTP9 (0.999); NOC4 (0.999); UTP20 (0.999)
Homologues (species, bitscore): RCL1 (Homo sapiens, 246.5); Rcl1 (Mus musculus, 243.8); rcl1 (Danio rerio, 246.5); rcl1 (Xenopus tropicalis, 223.0); Rtc1 (Drosophila melanogaster, 203.0); ZK1127.5 (Caenorhabditis elegans, 194.9); AT5G22100 (Arabidopsis thaliana, 199.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:292302-293405:+ | gene-YOL010W_AKU4011 | rna-NM_001183264.1_AKU4011 | cds-NP_014633.1_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:107911-109014:+ | gene-YOL010W_BG1 | rna-NM_001183264.1_BG1 | cds-NP_014633.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:295121-296224:+ | gene-YOL010W_Bruggeman | rna-NM_001183264.1_Bruggeman | cds-NP_014633.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:293258-294361:+ | gene-YOL010W_CAT1 | rna-NM_001183264.1_CAT1 | cds-NP_014633.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:286978-288081:+ | gene-YOL010W_CBS1585 | rna-NM_001183264.1_CBS1585 | cds-NP_014633.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:291232-292335:+ | gene-YOL010W_CBS436 | rna-NM_001183264.1_CBS436 | cds-NP_014633.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:286329-287432:+ | gene-YOL010W_CBS6412 | rna-NM_001183264.1_CBS6412 | cds-NP_014633.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:293862-294965:+ | gene-YOL010W_CBS6413 | rna-NM_001183264.1_CBS6413 | cds-NP_014633.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:307681-308784:+ | gene-YOL010W_CENPK1137D | rna-NM_001183264.1_CENPK1137D | cds-NP_014633.1_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:289114-290217:+ | gene-YOL010W_EthanolRed | rna-NM_001183264.1_EthanolRed | cds-NP_014633.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:292441-293544:+ | gene-YOL010W_FaliES1 | rna-NM_001183264.1_FaliES1 | cds-NP_014633.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000015.1:35719-36822:- | gene-YOL010W_JAY291 | rna-NM_001183264.1_JAY291 | cds-NP_014633.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:299330-300433:+ | gene-YOL010W_MUCL30387 | rna-NM_001183264.1_MUCL30387 | cds-NP_014633.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:302764-303867:+ | gene-YOL010W_MUCL30388 | rna-NM_001183264.1_MUCL30388 | cds-NP_014633.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:294461-295564:+ | gene-YOL010W_MUCL39482 | rna-NM_001183264.1_MUCL39482 | cds-NP_014633.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:309378-310481:+ | gene-YOL010W_MUCL42920 | rna-NM_001183264.1_MUCL42920 | cds-NP_014633.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:307827-308930:+ | gene-YOL010W_NCIM3186 | rna-NM_001183264.1_NCIM3186 | cds-NP_014633.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:301194-302297:+ | gene-YOL010W_NCYC1407 | rna-NM_001183264.1_NCYC1407 | cds-NP_014633.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:295833-296936:+ | gene-YOL010W_PE2H3 | rna-NM_001183264.1_PE2H3 | cds-NP_014633.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:306232-307335:+ | gene-YOL010W_PE2H4 | rna-NM_001183264.1_PE2H4 | cds-NP_014633.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:307938-309041:+ | gene-YOL010W_S288C | rna-NM_001183264.1_S288C | cds-NP_014633.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:275920-277023:+ | gene-YOL010W_SA1 | rna-NM_001183264.1_SA1 | cds-NP_014633.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:291012-292115:+ | gene-YOL010W_ThermosaccDry | rna-NM_001183264.1_ThermosaccDry | cds-NP_014633.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:291795-292898:+ | gene-YOL010W_VR1 | rna-NM_001183264.1_VR1 | cds-NP_014633.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:25682-26785:+ | gene-YOL010W_ZTW1 | rna-NM_001183264.1_ZTW1 | cds-NP_014633.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:299302-300405:+ | gene-YOL010W_Sparadoxus | rna-NM_001183264.1_Sparadoxus | cds-NP_014633.1_Sparadoxus | 92.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |