Gene name: RCF2
Reference locus (S288C): YNR018W
Gene biotype: protein_coding
Description: Respiratory supercomplex factor 2, mitochondrial; Cytochrome c oxidase subunit; has a role in assembly of respiratory supercomplexes; similar to Rcf1p, and either Rcf1p or Rcf2p is required for late-stage assembly of the Cox12p and Cox13p subunits and for cytochrome c oxidase activity; associates with the cytochrome c oxidase - cytochrome bc1 supercomplex; null mutant accumulates reactive oxygen species; member of the conserved hypoxia induced gene family; C. elegans homolog is functional in yeast
Top 10 interactors (score): COX12 (0.992); COR1 (0.98); COX13 (0.978); RCF1 (0.967); COX1 (0.956); COX4 (0.95); COX26 (0.94); QCR9 (0.937); COX2 (0.925); QCR2 (0.923); COX3 (0.922); RIP1 (0.92); COX6 (0.918); QCR8 (0.907); CYT1 (0.895); QCR6 (0.883); COX5B (0.857); RCF3 (0.837); COB (0.812); COX9 (0.808)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:647879-648553:+ | gene-YNR018W_AKU4011 | rna-NM_001183195.1_AKU4011 | cds-NP_014415.1_AKU4011 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:555800-556474:+ | gene-YNR018W_BG1 | rna-NM_001183195.1_BG1 | cds-NP_014415.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:665384-666058:+ | gene-YNR018W_Bruggeman | rna-NM_001183195.1_Bruggeman | cds-NP_014415.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:699573-700247:+ | gene-YNR018W_CAT1 | rna-NM_001183195.1_CAT1 | cds-NP_014415.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:653672-654346:+ | gene-YNR018W_CBS1585 | rna-NM_001183195.1_CBS1585 | cds-NP_014415.1_CBS1585 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:715342-716016:+ | gene-YNR018W_CBS436 | rna-NM_001183195.1_CBS436 | cds-NP_014415.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:642866-643540:+ | gene-YNR018W_CBS6412 | rna-NM_001183195.1_CBS6412 | cds-NP_014415.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:644566-645240:+ | gene-YNR018W_CBS6413 | rna-NM_001183195.1_CBS6413 | cds-NP_014415.1_CBS6413 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:657956-658630:+ | gene-YNR018W_CENPK1137D | rna-NM_001183195.1_CENPK1137D | cds-NP_014415.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:649616-650290:+ | gene-YNR018W_EthanolRed | rna-NM_001183195.1_EthanolRed | cds-NP_014415.1_EthanolRed | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:640815-641489:+ | gene-YNR018W_FaliES1 | rna-NM_001183195.1_FaliES1 | cds-NP_014415.1_FaliES1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000037.1:61290-61964:- | gene-YNR018W_JAY291 | rna-NM_001183195.1_JAY291 | cds-NP_014415.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:663130-663804:+ | gene-YNR018W_MUCL30387 | rna-NM_001183195.1_MUCL30387 | cds-NP_014415.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:703938-704612:+ | gene-YNR018W_MUCL30388 | rna-NM_001183195.1_MUCL30388 | cds-NP_014415.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:645175-645849:+ | gene-YNR018W_MUCL39482 | rna-NM_001183195.1_MUCL39482 | cds-NP_014415.1_MUCL39482 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:649341-650015:+ | gene-YNR018W_MUCL42920 | rna-NM_001183195.1_MUCL42920 | cds-NP_014415.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:664239-664913:+ | gene-YNR018W_NCIM3186 | rna-NM_001183195.1_NCIM3186 | cds-NP_014415.1_NCIM3186 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:647681-648355:+ | gene-YNR018W_NCYC1407 | rna-NM_001183195.1_NCYC1407 | cds-NP_014415.1_NCYC1407 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:648753-649427:+ | gene-YNR018W_PE2H3 | rna-NM_001183195.1_PE2H3 | cds-NP_014415.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:650071-650745:+ | gene-YNR018W_PE2H4 | rna-NM_001183195.1_PE2H4 | cds-NP_014415.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:664270-664944:+ | gene-YNR018W_S288C | rna-NM_001183195.1_S288C | cds-NP_014415.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000068.1:61978-62652:+ | gene-YNR018W_SA1 | rna-NM_001183195.1_SA1 | cds-NP_014415.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:641158-641832:+ | gene-YNR018W_ThermosaccDry | rna-NM_001183195.1_ThermosaccDry | cds-NP_014415.1_ThermosaccDry | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:683095-683769:+ | gene-YNR018W_VR1 | rna-NM_001183195.1_VR1 | cds-NP_014415.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:550562-551236:+ | gene-YNR018W_ZTW1 | rna-NM_001183195.1_ZTW1 | cds-NP_014415.1_ZTW1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:655221-655895:+ | gene-YNR018W_Sparadoxus | rna-NM_001183195.1_Sparadoxus | cds-NP_014415.1_Sparadoxus | 91.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |