Gene name: RCF1
Reference locus (S288C): YML030W
Gene biotype: protein_coding
Description: Respiratory supercomplex factor 1, mitochondrial; Cytochrome c oxidase subunit; required for assembly of the Complex III-Complex IV supercomplex, and for assembly of Cox13p and Rcf2p into cytochrome c oxidase; similar to Rcf2p, and either Rcf1p or Rcf2p is required for late-stage assembly of the Cox12p and Cox13p subunits and for cytochrome c oxidase activity; required for growth under hypoxic conditions; member of the hypoxia induced gene family; C. elegans and human orthologs are functional in yeast
Top 10 interactors (score): COX12 (0.999); COX13 (0.978); RCF2 (0.967); COR1 (0.946); COX3 (0.942); COX4 (0.931); COX2 (0.93); CYT1 (0.873); RCF3 (0.864); QCR2 (0.849); COX1 (0.84); DBP10 (0.821); COX26 (0.797); AIM36 (0.779); PUF3 (0.763); ADE1 (0.761); PET9 (0.756); COX6 (0.745); MRH4 (0.732); NUF2 (0.716)
Homologues (species, bitscore): CG9921 (Drosophila melanogaster, 54.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:266029-266508:+ | gene-YML030W_AKU4011 | rna-NM_001182388.1_AKU4011 | cds-NP_013682.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:276363-276842:- | gene-YML030W_BG1 | rna-NM_001182388.1_BG1 | cds-NP_013682.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:205983-206462:+ | gene-YML030W_Bruggeman | rna-NM_001182388.1_Bruggeman | cds-NP_013682.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:208496-208975:+ | gene-YML030W_CAT1 | rna-NM_001182388.1_CAT1 | cds-NP_013682.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:198978-199457:+ | gene-YML030W_CBS1585 | rna-NM_001182388.1_CBS1585 | cds-NP_013682.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:204516-204995:+ | gene-YML030W_CBS436 | rna-NM_001182388.1_CBS436 | cds-NP_013682.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:312717-313196:+ | gene-YML030W_CBS6412 | rna-NM_001182388.1_CBS6412 | cds-NP_013682.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:198236-198715:+ | gene-YML030W_CBS6413 | rna-NM_001182388.1_CBS6413 | cds-NP_013682.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:210958-211437:+ | gene-YML030W_CENPK1137D | rna-NM_001182388.1_CENPK1137D | cds-NP_013682.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:199005-199484:+ | gene-YML030W_EthanolRed | rna-NM_001182388.1_EthanolRed | cds-NP_013682.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:201969-202448:+ | gene-YML030W_FaliES1 | rna-NM_001182388.1_FaliES1 | cds-NP_013682.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000237.1:9690-10169:- | gene-YML030W_JAY291 | rna-NM_001182388.1_JAY291 | cds-NP_013682.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:203715-204194:+ | gene-YML030W_MUCL30387 | rna-NM_001182388.1_MUCL30387 | cds-NP_013682.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:207692-208171:+ | gene-YML030W_MUCL30388 | rna-NM_001182388.1_MUCL30388 | cds-NP_013682.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:199264-199743:+ | gene-YML030W_MUCL39482 | rna-NM_001182388.1_MUCL39482 | cds-NP_013682.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:204821-205300:+ | gene-YML030W_MUCL42920 | rna-NM_001182388.1_MUCL42920 | cds-NP_013682.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:216389-216868:+ | gene-YML030W_NCIM3186 | rna-NM_001182388.1_NCIM3186 | cds-NP_013682.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:199207-199686:+ | gene-YML030W_NCYC1407 | rna-NM_001182388.1_NCYC1407 | cds-NP_013682.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:205107-205586:+ | gene-YML030W_PE2H3 | rna-NM_001182388.1_PE2H3 | cds-NP_013682.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:211202-211681:+ | gene-YML030W_PE2H4 | rna-NM_001182388.1_PE2H4 | cds-NP_013682.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:216435-216914:+ | gene-YML030W_S288C | rna-NM_001182388.1_S288C | cds-NP_013682.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000088.1:21935-22414:- | gene-YML030W_SA1 | rna-NM_001182388.1_SA1 | cds-NP_013682.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:199042-199521:+ | gene-YML030W_ThermosaccDry | rna-NM_001182388.1_ThermosaccDry | cds-NP_013682.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:203048-203527:+ | gene-YML030W_VR1 | rna-NM_001182388.1_VR1 | cds-NP_013682.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:178095-178574:+ | gene-YML030W_ZTW1 | rna-NM_001182388.1_ZTW1 | cds-NP_013682.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:209843-210322:+ | gene-YML030W_Sparadoxus | rna-NM_001182388.1_Sparadoxus | cds-NP_013682.1_Sparadoxus | 91.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |