Gene name: RBS1
Reference locus (S288C): YDL189W
Gene biotype: protein_coding
Description: RNA-binding suppressor of PAS kinase protein 1; Protein involved in assembly of the RNA polymerase III (Pol III) complex; high copy suppressor of Pol III assembly mutation and psk1 psk2 mutations that confer temperature-sensitivity for galactose utilization; physically interacts with Pol III; proposed to bind single-stranded nucleic acids via its R3H domain
Top 10 interactors (score): RET1 (0.805); COR1 (0.771); QCR2 (0.722); RPC19 (0.69); DIG2 (0.655); DIG1 (0.645); CRM1 (0.637); YHR131C (0.62); RCK1 (0.618); RPB5 (0.609); YDR090C (0.591); YBL081W (0.573); YFR016C (0.57); USB1 (0.569); MRX12 (0.568); DIB1 (0.568); TMC1 (0.562); RET3 (0.551); YMR196W (0.528); PSP1 (0.526)
Homologues (species, bitscore): R3HDM2 (Homo sapiens, 54.3); R3hdm2 (Mus musculus, 54.7); r3hdm1 (Danio rerio, 52.4); r3hdm2 (Xenopus tropicalis, 52.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:106200-107573:+ | gene-YDL189W_AKU4011 | rna-NM_001180249.1_AKU4011 | cds-NP_010092.2_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:441592-442965:- | gene-YDL189W_BG1 | rna-NM_001180249.1_BG1 | cds-NP_010092.2_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:122562-123935:+ | gene-YDL189W_Bruggeman | rna-NM_001180249.1_Bruggeman | cds-NP_010092.2_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000024.1:5853-7226:- | gene-YDL189W_CAT1 | rna-NM_001180249.1_CAT1 | cds-NP_010092.2_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:104740-106113:+ | gene-YDL189W_CBS1585 | rna-NM_001180249.1_CBS1585 | cds-NP_010092.2_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:121710-123083:+ | gene-YDL189W_CBS436 | rna-NM_001180249.1_CBS436 | cds-NP_010092.2_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:104666-106039:+ | gene-YDL189W_CBS6412 | rna-NM_001180249.1_CBS6412 | cds-NP_010092.2_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:122710-124083:+ | gene-YDL189W_CBS6413 | rna-NM_001180249.1_CBS6413 | cds-NP_010092.2_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:120887-122260:+ | gene-YDL189W_CENPK1137D | rna-NM_001180249.1_CENPK1137D | cds-NP_010092.2_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:118350-119723:+ | gene-YDL189W_EthanolRed | rna-NM_001180249.1_EthanolRed | cds-NP_010092.2_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:123457-124830:+ | gene-YDL189W_FaliES1 | rna-NM_001180249.1_FaliES1 | cds-NP_010092.2_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000403.1:3743-5116:+ | gene-YDL189W_JAY291 | rna-NM_001180249.1_JAY291 | cds-NP_010092.2_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:120830-122203:+ | gene-YDL189W_MUCL30387 | rna-NM_001180249.1_MUCL30387 | cds-NP_010092.2_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:110643-112016:+ | gene-YDL189W_MUCL30388 | rna-NM_001180249.1_MUCL30388 | cds-NP_010092.2_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:105896-107269:+ | gene-YDL189W_MUCL39482 | rna-NM_001180249.1_MUCL39482 | cds-NP_010092.2_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:121971-123344:+ | gene-YDL189W_MUCL42920 | rna-NM_001180249.1_MUCL42920 | cds-NP_010092.2_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:122139-123512:+ | gene-YDL189W_NCIM3186 | rna-NM_001180249.1_NCIM3186 | cds-NP_010092.2_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:105541-106914:+ | gene-YDL189W_NCYC1407 | rna-NM_001180249.1_NCYC1407 | cds-NP_010092.2_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:113104-114477:+ | gene-YDL189W_PE2H3 | rna-NM_001180249.1_PE2H3 | cds-NP_010092.2_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:113114-114487:+ | gene-YDL189W_PE2H4 | rna-NM_001180249.1_PE2H4 | cds-NP_010092.2_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:122216-123589:+ | gene-YDL189W_S288C | rna-NM_001180249.1_S288C | cds-NP_010092.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000090.1:36708-38081:+ | gene-YDL189W_SA1 | rna-NM_001180249.1_SA1 | cds-NP_010092.2_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:123216-124589:+ | gene-YDL189W_ThermosaccDry | rna-NM_001180249.1_ThermosaccDry | cds-NP_010092.2_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:123655-125028:+ | gene-YDL189W_VR1 | rna-NM_001180249.1_VR1 | cds-NP_010092.2_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:121390-122763:+ | gene-YDL189W_ZTW1 | rna-NM_001180249.1_ZTW1 | cds-NP_010092.2_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:124865-126226:+ | gene-YDL189W_Sparadoxus | rna-NM_001180249.1_Sparadoxus | cds-NP_010092.2_Sparadoxus | 87.6 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |