Gene name: RBD2
Reference locus (S288C): YPL246C
Gene biotype: protein_coding
Description: Rhomboid protein 2; Possible rhomboid protease; has similarity to eukaryotic rhomboid proteases including Pcp1p
Top 10 interactors (score): PCP1 (0.982); SEC11 (0.907); ECM14 (0.799); YHR086W-A (0.765); YOL159C-A (0.748); CDC48 (0.742); AFG2 (0.72); SPO1 (0.716); BZZ1 (0.713); YPL102C (0.713); MGM1 (0.67); MRD1 (0.667); DSC2 (0.663); YNL247W (0.654); RPS23A (0.647); RPS23B (0.647); LAS17 (0.62); YPL261C (0.613); XPT1 (0.611); SUA7 (0.592)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:62259-63047:- | gene-YPL246C_AKU4011 | rna-NM_001184060.1_AKU4011 | cds-NP_015078.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000184.1:12097-12885:+ | gene-YPL246C_BG1 | rna-NM_001184060.1_BG1 | cds-NP_015078.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:86147-86935:- | gene-YPL246C_Bruggeman | rna-NM_001184060.1_Bruggeman | cds-NP_015078.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:84255-85043:- | gene-YPL246C_CAT1 | rna-NM_001184060.1_CAT1 | cds-NP_015078.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:66572-67360:- | gene-YPL246C_CBS1585 | rna-NM_001184060.1_CBS1585 | cds-NP_015078.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:80991-81779:- | gene-YPL246C_CBS436 | rna-NM_001184060.1_CBS436 | cds-NP_015078.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:71736-72524:- | gene-YPL246C_CBS6412 | rna-NM_001184060.1_CBS6412 | cds-NP_015078.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:62722-63510:- | gene-YPL246C_CBS6413 | rna-NM_001184060.1_CBS6413 | cds-NP_015078.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:84444-85232:- | gene-YPL246C_CENPK1137D | rna-NM_001184060.1_CENPK1137D | cds-NP_015078.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:61661-62449:- | gene-YPL246C_EthanolRed | rna-NM_001184060.1_EthanolRed | cds-NP_015078.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:68468-69256:- | gene-YPL246C_FaliES1 | rna-NM_001184060.1_FaliES1 | cds-NP_015078.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000264.1:11498-12286:+ | gene-YPL246C_JAY291 | rna-NM_001184060.1_JAY291 | cds-NP_015078.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:79303-80091:- | gene-YPL246C_MUCL30387 | rna-NM_001184060.1_MUCL30387 | cds-NP_015078.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:77744-78532:- | gene-YPL246C_MUCL30388 | rna-NM_001184060.1_MUCL30388 | cds-NP_015078.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:59702-60490:- | gene-YPL246C_MUCL39482 | rna-NM_001184060.1_MUCL39482 | cds-NP_015078.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:78573-79361:- | gene-YPL246C_MUCL42920 | rna-NM_001184060.1_MUCL42920 | cds-NP_015078.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:84492-85280:- | gene-YPL246C_NCIM3186 | rna-NM_001184060.1_NCIM3186 | cds-NP_015078.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:66149-66937:- | gene-YPL246C_NCYC1407 | rna-NM_001184060.1_NCYC1407 | cds-NP_015078.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:73871-74659:- | gene-YPL246C_PE2H3 | rna-NM_001184060.1_PE2H3 | cds-NP_015078.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:73514-74302:- | gene-YPL246C_PE2H4 | rna-NM_001184060.1_PE2H4 | cds-NP_015078.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:84509-85297:- | gene-YPL246C_S288C | rna-NM_001184060.1_S288C | cds-NP_015078.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000056.1:26388-27176:- | gene-YPL246C_SA1 | rna-NM_001184060.1_SA1 | cds-NP_015078.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:68469-69257:- | gene-YPL246C_ThermosaccDry | rna-NM_001184060.1_ThermosaccDry | cds-NP_015078.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:308340-309128:- | gene-YPL246C_VR1 | rna-NM_001184060.1_VR1 | cds-NP_015078.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:68014-68802:- | gene-YPL246C_ZTW1 | rna-NM_001184060.1_ZTW1 | cds-NP_015078.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:69557-70345:- | gene-YPL246C_Sparadoxus | rna-NM_001184060.1_Sparadoxus | cds-NP_015078.1_Sparadoxus | 87.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |