Gene name: RBA50
Reference locus (S288C): YDR527W
Gene biotype: protein_coding
Description: Protein involved in transcription; interacts with RNA polymerase II subunits Rpb2p, Rpb3, and Rpb11p; has similarity to human RPAP1
Top 10 interactors (score): GPN2 (0.987); RSM26 (0.896); DNF3 (0.894); NPA3 (0.884); GPN3 (0.823); RPB3 (0.815); RPB11 (0.774); RTR1 (0.762); RPP1A (0.757); RPB10 (0.739); SPT5 (0.73); THP1 (0.715); BCK2 (0.714); RPO21 (0.702); MSG5 (0.698); ERG24 (0.674); VPS8 (0.656); RTR2 (0.653); RPB2 (0.651); MSY1 (0.645)
Homologues (species, bitscore): RPAP1 (Homo sapiens, 72.4); Rpap1 (Mus musculus, 76.3); rpap1 (Danio rerio, 82.8); rpap1 (Xenopus tropicalis, 92.4); CG32104 (Drosophila melanogaster, 54.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1431134-1432453:+ | gene-YDR527W_AKU4011 | rna-NM_001180835.4_AKU4011 | cds-NP_010816.4_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:72758-74077:+ | gene-YDR527W_BG1 | rna-NM_001180835.4_BG1 | cds-NP_010816.4_BG1 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1462426-1463745:+ | gene-YDR527W_Bruggeman | rna-NM_001180835.4_Bruggeman | cds-NP_010816.4_Bruggeman | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1439598-1440917:+ | gene-YDR527W_CAT1 | rna-NM_001180835.4_CAT1 | cds-NP_010816.4_CAT1 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1425862-1427181:+ | gene-YDR527W_CBS1585 | rna-NM_001180835.4_CBS1585 | cds-NP_010816.4_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1445066-1446385:+ | gene-YDR527W_CBS436 | rna-NM_001180835.4_CBS436 | cds-NP_010816.4_CBS436 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1421025-1422344:+ | gene-YDR527W_CBS6412 | rna-NM_001180835.4_CBS6412 | cds-NP_010816.4_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1444522-1445841:+ | gene-YDR527W_CBS6413 | rna-NM_001180835.4_CBS6413 | cds-NP_010816.4_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1489776-1491095:+ | gene-YDR527W_CENPK1137D | rna-NM_001180835.4_CENPK1137D | cds-NP_010816.4_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1434393-1435712:+ | gene-YDR527W_EthanolRed | rna-NM_001180835.4_EthanolRed | cds-NP_010816.4_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1437945-1439264:+ | gene-YDR527W_FaliES1 | rna-NM_001180835.4_FaliES1 | cds-NP_010816.4_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:136289-137609:+ | gene-YDR527W_JAY291 | rna-NM_001180835.4_JAY291 | cds-NP_010816.4_JAY291 | 98.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1445521-1446840:+ | gene-YDR527W_MUCL30387 | rna-NM_001180835.4_MUCL30387 | cds-NP_010816.4_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1426962-1428281:+ | gene-YDR527W_MUCL30388 | rna-NM_001180835.4_MUCL30388 | cds-NP_010816.4_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1417359-1418678:+ | gene-YDR527W_MUCL39482 | rna-NM_001180835.4_MUCL39482 | cds-NP_010816.4_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1359994-1361313:+ | gene-YDR527W_MUCL42920 | rna-NM_001180835.4_MUCL42920 | cds-NP_010816.4_MUCL42920 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1491017-1492336:+ | gene-YDR527W_NCIM3186 | rna-NM_001180835.4_NCIM3186 | cds-NP_010816.4_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1430652-1431971:+ | gene-YDR527W_NCYC1407 | rna-NM_001180835.4_NCYC1407 | cds-NP_010816.4_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1441557-1442876:+ | gene-YDR527W_PE2H3 | rna-NM_001180835.4_PE2H3 | cds-NP_010816.4_PE2H3 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1447025-1448344:+ | gene-YDR527W_PE2H4 | rna-NM_001180835.4_PE2H4 | cds-NP_010816.4_PE2H4 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1491094-1492413:+ | gene-YDR527W_S288C | rna-NM_001180835.4_S288C | cds-NP_010816.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:124692-126011:- | gene-YDR527W_SA1 | rna-NM_001180835.4_SA1 | cds-NP_010816.4_SA1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1442167-1443486:+ | gene-YDR527W_ThermosaccDry | rna-NM_001180835.4_ThermosaccDry | cds-NP_010816.4_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1457948-1459267:+ | gene-YDR527W_VR1 | rna-NM_001180835.4_VR1 | cds-NP_010816.4_VR1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:484828-486148:+ | gene-YDR527W_ZTW1 | rna-NM_001180835.4_ZTW1 | cds-NP_010816.4_ZTW1 | 99.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1451096-1452391:+ | gene-YDR527W_Sparadoxus | rna-NM_001180835.4_Sparadoxus | cds-NP_010816.4_Sparadoxus | 85.3 | 98.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |