Gene name: RAV1
Reference locus (S288C): YJR033C
Gene biotype: protein_coding
Description: Regulator of V-ATPase in vacuolar membrane protein 1; Subunit of RAVE complex (Rav1p, Rav2p, Skp1p); the RAVE complex promotes assembly of the V-ATPase holoenzyme; required for transport between the early and late endosome/PVC and for localization of TGN membrane proteins; potential Cdc28p substrate
Top 10 interactors (score): RAV2 (0.999); SKP1 (0.995); VMA2 (0.982); VPH1 (0.97); VMA4 (0.941); VMA1 (0.936); STV1 (0.927); VMA5 (0.906); VMA6 (0.892); VMA13 (0.874); VMA8 (0.829); TRS85 (0.792); VMA10 (0.791); VMA3 (0.779); VMA11 (0.768); YGL024W (0.747); VMA16 (0.738); VMA7 (0.726); LAA1 (0.715); YDR250C (0.713)
Homologues (species, bitscore): DMXL1 (Homo sapiens, 141.7); Dmxl2 (Mus musculus, 139.8); dmxl2 (Danio rerio, 64.7); dmxl2 (Xenopus tropicalis, 147.5); Rbcn-3A (Drosophila melanogaster, 134.4); rbc-1 (Caenorhabditis elegans, 125.6); AT2G46560 (Arabidopsis thaliana, 131.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:464072-468145:- | gene-YJR033C_AKU4011 | rna-NM_001181691.3_AKU4011 | cds-NP_012567.3_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:144643-148716:+ | gene-YJR033C_BG1 | rna-NM_001181691.3_BG1 | cds-NP_012567.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:478114-482187:- | gene-YJR033C_Bruggeman | rna-NM_001181691.3_Bruggeman | cds-NP_012567.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:482044-486117:- | gene-YJR033C_CAT1 | rna-NM_001181691.3_CAT1 | cds-NP_012567.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:475651-479724:- | gene-YJR033C_CBS1585 | rna-NM_001181691.3_CBS1585 | cds-NP_012567.3_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:494577-498650:- | gene-YJR033C_CBS436 | rna-NM_001181691.3_CBS436 | cds-NP_012567.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:463857-467930:- | gene-YJR033C_CBS6412 | rna-NM_001181691.3_CBS6412 | cds-NP_012567.3_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:466098-470171:- | gene-YJR033C_CBS6413 | rna-NM_001181691.3_CBS6413 | cds-NP_012567.3_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:474746-478819:- | gene-YJR033C_CENPK1137D | rna-NM_001181691.3_CENPK1137D | cds-NP_012567.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:469006-473079:- | gene-YJR033C_EthanolRed | rna-NM_001181691.3_EthanolRed | cds-NP_012567.3_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:480223-484296:- | gene-YJR033C_FaliES1 | rna-NM_001181691.3_FaliES1 | cds-NP_012567.3_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000030.1:10719-14792:- | gene-YJR033C_JAY291 | rna-NM_001181691.3_JAY291 | cds-NP_012567.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:478424-482497:- | gene-YJR033C_MUCL30387 | rna-NM_001181691.3_MUCL30387 | cds-NP_012567.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:474969-479042:- | gene-YJR033C_MUCL30388 | rna-NM_001181691.3_MUCL30388 | cds-NP_012567.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:469111-473184:- | gene-YJR033C_MUCL39482 | rna-NM_001181691.3_MUCL39482 | cds-NP_012567.3_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:474376-478449:- | gene-YJR033C_MUCL42920 | rna-NM_001181691.3_MUCL42920 | cds-NP_012567.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:492357-496430:- | gene-YJR033C_NCIM3186 | rna-NM_001181691.3_NCIM3186 | cds-NP_012567.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:466950-471023:- | gene-YJR033C_NCYC1407 | rna-NM_001181691.3_NCYC1407 | cds-NP_012567.3_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:485283-489356:- | gene-YJR033C_PE2H3 | rna-NM_001181691.3_PE2H3 | cds-NP_012567.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:478979-483052:- | gene-YJR033C_PE2H4 | rna-NM_001181691.3_PE2H4 | cds-NP_012567.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:492378-496451:- | gene-YJR033C_S288C | rna-NM_001181691.3_S288C | cds-NP_012567.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:276857-280930:- | gene-YJR033C_SA1 | rna-NM_001181691.3_SA1 | cds-NP_012567.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:473911-477984:- | gene-YJR033C_ThermosaccDry | rna-NM_001181691.3_ThermosaccDry | cds-NP_012567.3_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:476146-480219:- | gene-YJR033C_VR1 | rna-NM_001181691.3_VR1 | cds-NP_012567.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:453796-457869:- | gene-YJR033C_ZTW1 | rna-NM_001181691.3_ZTW1 | cds-NP_012567.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:478539-482621:- | gene-YJR033C_Sparadoxus | rna-NM_001181691.3_Sparadoxus | cds-NP_012567.3_Sparadoxus | 89.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |