Gene name: RAP1
Reference locus (S288C): YNL216W
Gene biotype: protein_coding
Description: DNA-binding protein RAP1; Essential DNA-binding transcription regulator that binds many loci; involved in transcription activation, repression, chromatin silencing, telomere length maintenance; relocalizes to cytosol under hypoxia; conserved protein with N-terminal BRCT domain, central region with homology to Myb DNA binding domain, and C-terminal Rap1-specific protein-interaction domain (RCT domain); recruits Sir complex to telomeric DNA; present in quiescent cell telomere hyperclusters
Top 10 interactors (score): RIF2 (0.999); SIR3 (0.999); RIF1 (0.999); SIR4 (0.998); GCR1 (0.991); FHL1 (0.979); IFH1 (0.971); ABF1 (0.968); CDC13 (0.959); TBF1 (0.928); TEN1 (0.926); STN1 (0.916); GCN4 (0.907); REB1 (0.902); GCR2 (0.894); SIR2 (0.875); SIR1 (0.874); SFP1 (0.868); ESA1 (0.861); YKU70 (0.832)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:235471-237954:+ | gene-YNL216W_AKU4011 | rna-NM_001183054.1_AKU4011 | cds-NP_014183.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:139414-141897:+ | gene-YNL216W_BG1 | rna-NM_001183054.1_BG1 | cds-NP_014183.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:245514-247997:+ | gene-YNL216W_Bruggeman | rna-NM_001183054.1_Bruggeman | cds-NP_014183.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:252668-255151:+ | gene-YNL216W_CAT1 | rna-NM_001183054.1_CAT1 | cds-NP_014183.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:235866-238349:+ | gene-YNL216W_CBS1585 | rna-NM_001183054.1_CBS1585 | cds-NP_014183.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:230945-233428:+ | gene-YNL216W_CBS436 | rna-NM_001183054.1_CBS436 | cds-NP_014183.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:231904-234387:+ | gene-YNL216W_CBS6412 | rna-NM_001183054.1_CBS6412 | cds-NP_014183.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:232550-235033:+ | gene-YNL216W_CBS6413 | rna-NM_001183054.1_CBS6413 | cds-NP_014183.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:235490-237973:+ | gene-YNL216W_CENPK1137D | rna-NM_001183054.1_CENPK1137D | cds-NP_014183.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:233108-235591:+ | gene-YNL216W_EthanolRed | rna-NM_001183054.1_EthanolRed | cds-NP_014183.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:227850-230333:+ | gene-YNL216W_FaliES1 | rna-NM_001183054.1_FaliES1 | cds-NP_014183.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:139007-141490:+ | gene-YNL216W_JAY291 | rna-NM_001183054.1_JAY291 | cds-NP_014183.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:241050-243533:+ | gene-YNL216W_MUCL30387 | rna-NM_001183054.1_MUCL30387 | cds-NP_014183.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:239631-242114:+ | gene-YNL216W_MUCL30388 | rna-NM_001183054.1_MUCL30388 | cds-NP_014183.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:233356-235839:+ | gene-YNL216W_MUCL39482 | rna-NM_001183054.1_MUCL39482 | cds-NP_014183.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:235612-238095:+ | gene-YNL216W_MUCL42920 | rna-NM_001183054.1_MUCL42920 | cds-NP_014183.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:241658-244141:+ | gene-YNL216W_NCIM3186 | rna-NM_001183054.1_NCIM3186 | cds-NP_014183.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:235446-237929:+ | gene-YNL216W_NCYC1407 | rna-NM_001183054.1_NCYC1407 | cds-NP_014183.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:232352-234835:+ | gene-YNL216W_PE2H3 | rna-NM_001183054.1_PE2H3 | cds-NP_014183.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:231740-234223:+ | gene-YNL216W_PE2H4 | rna-NM_001183054.1_PE2H4 | cds-NP_014183.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:241689-244172:+ | gene-YNL216W_S288C | rna-NM_001183054.1_S288C | cds-NP_014183.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000040.1:8137-10620:- | gene-YNL216W_SA1 | rna-NM_001183054.1_SA1 | cds-NP_014183.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:228706-231189:+ | gene-YNL216W_ThermosaccDry | rna-NM_001183054.1_ThermosaccDry | cds-NP_014183.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:247708-250191:+ | gene-YNL216W_VR1 | rna-NM_001183054.1_VR1 | cds-NP_014183.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:139035-141518:+ | gene-YNL216W_ZTW1 | rna-NM_001183054.1_ZTW1 | cds-NP_014183.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:239117-241615:+ | gene-YNL216W_Sparadoxus | rna-NM_001183054.1_Sparadoxus | cds-NP_014183.1_Sparadoxus | 89.3 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |