Gene name: RAM1
Reference locus (S288C): YDL090C
Gene biotype: protein_coding
Description: Beta subunit of the CAAX farnesyltransferase (FTase); this complex prenylates the a-factor mating pheromone and Ras proteins; required for the membrane localization of Ras proteins and a-factor; homolog of the mammalian FTase beta subunit
Top 10 interactors (score): RAM2 (0.999); STE24 (0.995); RCE1 (0.995); BET4 (0.969); BTS1 (0.966); RER2 (0.962); STE14 (0.955); SRT1 (0.951); ERG20 (0.949); COQ1 (0.934); NUS1 (0.909); STE6 (0.868); AXL1 (0.86); ERG9 (0.832); YPT1 (0.828); SEC4 (0.822); SRP14 (0.711); RAS2 (0.707); MF(ALPHA)1 (0.7); PRP4 (0.697)
Homologues (species, bitscore): FNTB (Homo sapiens, 255.4); Fntb (Mus musculus, 252.3); fntb (Danio rerio, 262.7); fntb (Xenopus tropicalis, 252.3); CG17565 (Drosophila melanogaster, 253.8); fntb-1 (Caenorhabditis elegans, 222.6); ERA1 (Arabidopsis thaliana, 214.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:279647-280942:- | gene-YDL090C_AKU4011 | rna-NM_001180149.1_AKU4011 | cds-NP_010193.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:269003-270298:+ | gene-YDL090C_BG1 | rna-NM_001180149.1_BG1 | cds-NP_010193.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:297318-298613:- | gene-YDL090C_Bruggeman | rna-NM_001180149.1_Bruggeman | cds-NP_010193.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:293806-295101:- | gene-YDL090C_CAT1 | rna-NM_001180149.1_CAT1 | cds-NP_010193.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:277919-279214:- | gene-YDL090C_CBS1585 | rna-NM_001180149.1_CBS1585 | cds-NP_010193.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:294584-295879:- | gene-YDL090C_CBS436 | rna-NM_001180149.1_CBS436 | cds-NP_010193.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:276347-277642:- | gene-YDL090C_CBS6412 | rna-NM_001180149.1_CBS6412 | cds-NP_010193.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:295972-297267:- | gene-YDL090C_CBS6413 | rna-NM_001180149.1_CBS6413 | cds-NP_010193.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:293855-295150:- | gene-YDL090C_CENPK1137D | rna-NM_001180149.1_CENPK1137D | cds-NP_010193.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:290682-291977:- | gene-YDL090C_EthanolRed | rna-NM_001180149.1_EthanolRed | cds-NP_010193.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:296654-297949:- | gene-YDL090C_FaliES1 | rna-NM_001180149.1_FaliES1 | cds-NP_010193.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:66703-67998:- | gene-YDL090C_JAY291 | rna-NM_001180149.1_JAY291 | cds-NP_010193.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:294832-296127:- | gene-YDL090C_MUCL30387 | rna-NM_001180149.1_MUCL30387 | cds-NP_010193.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:285858-287153:- | gene-YDL090C_MUCL30388 | rna-NM_001180149.1_MUCL30388 | cds-NP_010193.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:279024-280319:- | gene-YDL090C_MUCL39482 | rna-NM_001180149.1_MUCL39482 | cds-NP_010193.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:201035-202330:- | gene-YDL090C_MUCL42920 | rna-NM_001180149.1_MUCL42920 | cds-NP_010193.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:294957-296252:- | gene-YDL090C_NCIM3186 | rna-NM_001180149.1_NCIM3186 | cds-NP_010193.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:279039-280334:- | gene-YDL090C_NCYC1407 | rna-NM_001180149.1_NCYC1407 | cds-NP_010193.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:285820-287115:- | gene-YDL090C_PE2H3 | rna-NM_001180149.1_PE2H3 | cds-NP_010193.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:285819-287114:- | gene-YDL090C_PE2H4 | rna-NM_001180149.1_PE2H4 | cds-NP_010193.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:295034-296329:- | gene-YDL090C_S288C | rna-NM_001180149.1_S288C | cds-NP_010193.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:138590-139885:+ | gene-YDL090C_SA1 | rna-NM_001180149.1_SA1 | cds-NP_010193.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:296165-297460:- | gene-YDL090C_ThermosaccDry | rna-NM_001180149.1_ThermosaccDry | cds-NP_010193.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:298237-299532:- | gene-YDL090C_VR1 | rna-NM_001180149.1_VR1 | cds-NP_010193.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:294084-295379:- | gene-YDL090C_ZTW1 | rna-NM_001180149.1_ZTW1 | cds-NP_010193.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:296136-297431:- | gene-YDL090C_Sparadoxus | rna-NM_001180149.1_Sparadoxus | cds-NP_010193.1_Sparadoxus | 89.0 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |