Gene name: RAD7
Reference locus (S288C): YJR052W
Gene biotype: protein_coding
Description: Uv-damaged dna-binding protein rad7; Nucleotide excision repair (NER) protein; binds damaged DNA during NER; binds DNA in an ATP-dependent manner (with Rad16p) during NER; required for repair of non-transcribed chromatin; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex
Top 10 interactors (score): RAD16 (0.999); RAD4 (0.999); RAD26 (0.998); RAD23 (0.997); ELC1 (0.996); RAD2 (0.993); RAD14 (0.988); CUL3 (0.985); RAD3 (0.977); SSL2 (0.977); ABF1 (0.976); RAD10 (0.96); SSL1 (0.959); RAD1 (0.951); TFB1 (0.943); HRT1 (0.93); RPB9 (0.921); SHU1 (0.9); SHU2 (0.9); PSY3 (0.9)
Homologues (species, bitscore): FBXL20 (Homo sapiens, 53.1); Fbxl20 (Mus musculus, 53.9); fbxl20 (Danio rerio, 61.2); fbxl20 (Xenopus tropicalis, 51.6); CG9003 (Drosophila melanogaster, 62.0); AT2G06040 (Arabidopsis thaliana, 59.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:503750-505447:+ | gene-YJR052W_AKU4011 | rna-NM_001181710.1_AKU4011 | cds-NP_012586.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:107544-109241:- | gene-YJR052W_BG1 | rna-NM_001181710.1_BG1 | cds-NP_012586.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:517800-519497:+ | gene-YJR052W_Bruggeman | rna-NM_001181710.1_Bruggeman | cds-NP_012586.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:521965-523662:+ | gene-YJR052W_CAT1 | rna-NM_001181710.1_CAT1 | cds-NP_012586.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:515820-517517:+ | gene-YJR052W_CBS1585 | rna-NM_001181710.1_CBS1585 | cds-NP_012586.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:534279-535976:+ | gene-YJR052W_CBS436 | rna-NM_001181710.1_CBS436 | cds-NP_012586.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:503535-505232:+ | gene-YJR052W_CBS6412 | rna-NM_001181710.1_CBS6412 | cds-NP_012586.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:505780-507477:+ | gene-YJR052W_CBS6413 | rna-NM_001181710.1_CBS6413 | cds-NP_012586.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:514426-516123:+ | gene-YJR052W_CENPK1137D | rna-NM_001181710.1_CENPK1137D | cds-NP_012586.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:508662-510359:+ | gene-YJR052W_EthanolRed | rna-NM_001181710.1_EthanolRed | cds-NP_012586.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:519879-521576:+ | gene-YJR052W_FaliES1 | rna-NM_001181710.1_FaliES1 | cds-NP_012586.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000352.1:6845-8542:- | gene-YJR052W_JAY291 | rna-NM_001181710.1_JAY291 | cds-NP_012586.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:518338-520035:+ | gene-YJR052W_MUCL30387 | rna-NM_001181710.1_MUCL30387 | cds-NP_012586.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:515611-517308:+ | gene-YJR052W_MUCL30388 | rna-NM_001181710.1_MUCL30388 | cds-NP_012586.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:509278-510975:+ | gene-YJR052W_MUCL39482 | rna-NM_001181710.1_MUCL39482 | cds-NP_012586.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:514048-515745:+ | gene-YJR052W_MUCL42920 | rna-NM_001181710.1_MUCL42920 | cds-NP_012586.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:532041-533738:+ | gene-YJR052W_NCIM3186 | rna-NM_001181710.1_NCIM3186 | cds-NP_012586.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:507135-508832:+ | gene-YJR052W_NCYC1407 | rna-NM_001181710.1_NCYC1407 | cds-NP_012586.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:525031-526728:+ | gene-YJR052W_PE2H3 | rna-NM_001181710.1_PE2H3 | cds-NP_012586.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:518727-520424:+ | gene-YJR052W_PE2H4 | rna-NM_001181710.1_PE2H4 | cds-NP_012586.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:532062-533759:+ | gene-YJR052W_S288C | rna-NM_001181710.1_S288C | cds-NP_012586.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000110.1:13629-15326:+ | gene-YJR052W_SA1 | rna-NM_001181710.1_SA1 | cds-NP_012586.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:513567-515264:+ | gene-YJR052W_ThermosaccDry | rna-NM_001181710.1_ThermosaccDry | cds-NP_012586.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:516063-517760:+ | gene-YJR052W_VR1 | rna-NM_001181710.1_VR1 | cds-NP_012586.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:493450-495147:+ | gene-YJR052W_ZTW1 | rna-NM_001181710.1_ZTW1 | cds-NP_012586.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:519765-521462:+ | gene-YJR052W_Sparadoxus | rna-NM_001181710.1_Sparadoxus | cds-NP_012586.1_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |