Gene name: RAD54
Reference locus (S288C): YGL163C
Gene biotype: protein_coding
Description: DNA repair and recombination protein RAD54; DNA-dependent ATPase that stimulates strand exchange; modifies the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; member of the SWI/SNF family of DNA translocases; forms nuclear foci upon DNA replication stress
Top 10 interactors (score): RAD51 (0.999); SRS2 (0.998); MUS81 (0.998); SGS1 (0.998); RAD57 (0.998); RAD52 (0.998); RAD55 (0.994); DMC1 (0.991); TOP3 (0.984); RAD27 (0.98); RAD59 (0.979); RAD1 (0.979); RDH54 (0.968); SPO11 (0.964); MEC1 (0.964); REV3 (0.955); DNL4 (0.951); EXO1 (0.949); POL30 (0.949); YKU70 (0.946)
Homologues (species, bitscore): RAD54L (Homo sapiens, 607.1); Rad54l (Mus musculus, 600.5); rad54l (Danio rerio, 611.3); rad54l (Xenopus tropicalis, 524.6); okr (Drosophila melanogaster, 561.6); rad-54 (Caenorhabditis elegans, 585.5); RAD54 (Arabidopsis thaliana, 458.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:196295-198991:- | gene-YGL163C_AKU4011 | rna-NM_001181028.1_AKU4011 | cds-NP_011352.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:211387-214083:+ | gene-YGL163C_BG1 | rna-NM_001181028.1_BG1 | cds-NP_011352.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:198440-201136:- | gene-YGL163C_Bruggeman | rna-NM_001181028.1_Bruggeman | cds-NP_011352.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:194310-197006:- | gene-YGL163C_CAT1 | rna-NM_001181028.1_CAT1 | cds-NP_011352.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:199431-202127:- | gene-YGL163C_CBS1585 | rna-NM_001181028.1_CBS1585 | cds-NP_011352.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:194300-196996:- | gene-YGL163C_CBS436 | rna-NM_001181028.1_CBS436 | cds-NP_011352.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:185888-188584:- | gene-YGL163C_CBS6412 | rna-NM_001181028.1_CBS6412 | cds-NP_011352.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:193737-196433:- | gene-YGL163C_CBS6413 | rna-NM_001181028.1_CBS6413 | cds-NP_011352.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:193969-196665:- | gene-YGL163C_CENPK1137D | rna-NM_001181028.1_CENPK1137D | cds-NP_011352.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:186092-188788:- | gene-YGL163C_EthanolRed | rna-NM_001181028.1_EthanolRed | cds-NP_011352.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:187338-190034:- | gene-YGL163C_FaliES1 | rna-NM_001181028.1_FaliES1 | cds-NP_011352.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000090.1:37523-40219:- | gene-YGL163C_JAY291 | rna-NM_001181028.1_JAY291 | cds-NP_011352.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:195688-198384:- | gene-YGL163C_MUCL30387 | rna-NM_001181028.1_MUCL30387 | cds-NP_011352.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:198778-201474:- | gene-YGL163C_MUCL30388 | rna-NM_001181028.1_MUCL30388 | cds-NP_011352.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:196458-199154:- | gene-YGL163C_MUCL39482 | rna-NM_001181028.1_MUCL39482 | cds-NP_011352.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:199028-201724:- | gene-YGL163C_MUCL42920 | rna-NM_001181028.1_MUCL42920 | cds-NP_011352.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:193707-196403:- | gene-YGL163C_NCIM3186 | rna-NM_001181028.1_NCIM3186 | cds-NP_011352.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:187924-190620:- | gene-YGL163C_NCYC1407 | rna-NM_001181028.1_NCYC1407 | cds-NP_011352.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:189824-192520:- | gene-YGL163C_PE2H3 | rna-NM_001181028.1_PE2H3 | cds-NP_011352.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:189382-192078:- | gene-YGL163C_PE2H4 | rna-NM_001181028.1_PE2H4 | cds-NP_011352.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:193707-196403:- | gene-YGL163C_S288C | rna-NM_001181028.1_S288C | cds-NP_011352.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000067.1:53492-56188:- | gene-YGL163C_SA1 | rna-NM_001181028.1_SA1 | cds-NP_011352.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:187567-190263:- | gene-YGL163C_ThermosaccDry | rna-NM_001181028.1_ThermosaccDry | cds-NP_011352.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:194736-197432:- | gene-YGL163C_VR1 | rna-NM_001181028.1_VR1 | cds-NP_011352.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:186023-188719:- | gene-YGL163C_ZTW1 | rna-NM_001181028.1_ZTW1 | cds-NP_011352.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:192794-195490:- | gene-YGL163C_Sparadoxus | rna-NM_001181028.1_Sparadoxus | cds-NP_011352.1_Sparadoxus | 90.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |