Gene name: RAD33
Reference locus (S288C): YML011C
Gene biotype: protein_coding
Description: Dna repair protein rad33; Protein involved in nucleotide excision repair; green fluorescent protein (GFP)-fusion protein localizes to the nucleus
Top 10 interactors (score): RAD34 (0.961); RAD23 (0.899); RAD4 (0.877); CDC31 (0.813); RAD26 (0.694); RAD16 (0.677); RAD28 (0.651); CUL3 (0.574); RAD7 (0.574); RAD14 (0.569); RAD10 (0.564); RAD3 (0.551); RAD1 (0.528); RPB4 (0.524); NFI1 (0.501); SSL2 (0.499); SSL1 (0.483); SIZ1 (0.469); TFB3 (0.453); RAD2 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:296449-296982:- | gene-YML011C_AKU4011 | rna-NM_001182368.1_AKU4011 | cds-NP_013702.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:245833-246366:+ | gene-YML011C_BG1 | rna-NM_001182368.1_BG1 | cds-NP_013702.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:236429-236962:- | gene-YML011C_Bruggeman | rna-NM_001182368.1_Bruggeman | cds-NP_013702.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:238939-239472:- | gene-YML011C_CAT1 | rna-NM_001182368.1_CAT1 | cds-NP_013702.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:229427-229960:- | gene-YML011C_CBS1585 | rna-NM_001182368.1_CBS1585 | cds-NP_013702.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:234955-235488:- | gene-YML011C_CBS436 | rna-NM_001182368.1_CBS436 | cds-NP_013702.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:343160-343693:- | gene-YML011C_CBS6412 | rna-NM_001182368.1_CBS6412 | cds-NP_013702.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:228682-229215:- | gene-YML011C_CBS6413 | rna-NM_001182368.1_CBS6413 | cds-NP_013702.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:241626-242159:- | gene-YML011C_CENPK1137D | rna-NM_001182368.1_CENPK1137D | cds-NP_013702.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:229461-229994:- | gene-YML011C_EthanolRed | rna-NM_001182368.1_EthanolRed | cds-NP_013702.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:232427-232960:- | gene-YML011C_FaliES1 | rna-NM_001182368.1_FaliES1 | cds-NP_013702.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:203968-204501:+ | gene-YML011C_JAY291 | rna-NM_001182368.1_JAY291 | cds-NP_013702.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:234168-234701:- | gene-YML011C_MUCL30387 | rna-NM_001182368.1_MUCL30387 | cds-NP_013702.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:238829-239362:- | gene-YML011C_MUCL30388 | rna-NM_001182368.1_MUCL30388 | cds-NP_013702.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:229707-230240:- | gene-YML011C_MUCL39482 | rna-NM_001182368.1_MUCL39482 | cds-NP_013702.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:235272-235805:- | gene-YML011C_MUCL42920 | rna-NM_001182368.1_MUCL42920 | cds-NP_013702.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:246849-247382:- | gene-YML011C_NCIM3186 | rna-NM_001182368.1_NCIM3186 | cds-NP_013702.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:229642-230175:- | gene-YML011C_NCYC1407 | rna-NM_001182368.1_NCYC1407 | cds-NP_013702.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:235572-236105:- | gene-YML011C_PE2H3 | rna-NM_001182368.1_PE2H3 | cds-NP_013702.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:241667-242200:- | gene-YML011C_PE2H4 | rna-NM_001182368.1_PE2H4 | cds-NP_013702.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:246895-247428:- | gene-YML011C_S288C | rna-NM_001182368.1_S288C | cds-NP_013702.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:290855-291388:+ | gene-YML011C_SA1 | rna-NM_001182368.1_SA1 | cds-NP_013702.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:229489-230022:- | gene-YML011C_ThermosaccDry | rna-NM_001182368.1_ThermosaccDry | cds-NP_013702.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:233461-233994:- | gene-YML011C_VR1 | rna-NM_001182368.1_VR1 | cds-NP_013702.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:208548-209081:- | gene-YML011C_ZTW1 | rna-NM_001182368.1_ZTW1 | cds-NP_013702.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:240205-240738:- | gene-YML011C_Sparadoxus | rna-NM_001182368.1_Sparadoxus | cds-NP_013702.1_Sparadoxus | 90.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |