Gene name: RAD28
Reference locus (S288C): YDR030C
Gene biotype: protein_coding
Description: Radiation-sensitive protein 28; Protein involved in DNA repair; related to the human CSA protein that is involved in transcription-coupled repair nucleotide excision repair
Top 10 interactors (score): RAD26 (0.933); SSL1 (0.873); TFB3 (0.873); SSL2 (0.854); TFB5 (0.841); TFB4 (0.84); TFB2 (0.823); RAD7 (0.817); RAD16 (0.812); RAD14 (0.802); HRT1 (0.801); RPB4 (0.792); TFB1 (0.791); RAD3 (0.784); CDC73 (0.77); RPB9 (0.741); RAD34 (0.713); RAD23 (0.712); RPB2 (0.703); DST1 (0.694)
Homologues (species, bitscore): ERCC8 (Homo sapiens, 73.2); Ercc8 (Mus musculus, 75.1); ercc8 (Danio rerio, 70.9); ercc8 (Xenopus tropicalis, 73.2); Caf1 (Drosophila melanogaster, 51.6); rba-1 (Caenorhabditis elegans, 52.4); ATCSA-1 (Arabidopsis thaliana, 70.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:487647-489167:- | gene-YDR030C_AKU4011 | rna-NM_001180338.3_AKU4011 | cds-NP_010313.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:60609-62129:+ | gene-YDR030C_BG1 | rna-NM_001180338.3_BG1 | cds-NP_010313.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:515913-517433:- | gene-YDR030C_Bruggeman | rna-NM_001180338.3_Bruggeman | cds-NP_010313.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:500989-502509:- | gene-YDR030C_CAT1 | rna-NM_001180338.3_CAT1 | cds-NP_010313.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:484236-485756:- | gene-YDR030C_CBS1585 | rna-NM_001180338.3_CBS1585 | cds-NP_010313.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:501251-502771:- | gene-YDR030C_CBS436 | rna-NM_001180338.3_CBS436 | cds-NP_010313.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:481148-482668:- | gene-YDR030C_CBS6412 | rna-NM_001180338.3_CBS6412 | cds-NP_010313.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:503425-504945:- | gene-YDR030C_CBS6413 | rna-NM_001180338.3_CBS6413 | cds-NP_010313.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:500720-502240:- | gene-YDR030C_CENPK1137D | rna-NM_001180338.3_CENPK1137D | cds-NP_010313.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:495671-497191:- | gene-YDR030C_EthanolRed | rna-NM_001180338.3_EthanolRed | cds-NP_010313.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:502028-503548:- | gene-YDR030C_FaliES1 | rna-NM_001180338.3_FaliES1 | cds-NP_010313.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000042.1:10016-11535:+ | gene-YDR030C_JAY291 | rna-NM_001180338.3_JAY291 | cds-NP_010313.3_JAY291 | 99.8 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:501497-503017:- | gene-YDR030C_MUCL30387 | rna-NM_001180338.3_MUCL30387 | cds-NP_010313.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:491958-493478:- | gene-YDR030C_MUCL30388 | rna-NM_001180338.3_MUCL30388 | cds-NP_010313.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:485604-487124:- | gene-YDR030C_MUCL39482 | rna-NM_001180338.3_MUCL39482 | cds-NP_010313.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:407287-408807:- | gene-YDR030C_MUCL42920 | rna-NM_001180338.3_MUCL42920 | cds-NP_010313.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:501676-503196:- | gene-YDR030C_NCIM3186 | rna-NM_001180338.3_NCIM3186 | cds-NP_010313.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:485037-486557:- | gene-YDR030C_NCYC1407 | rna-NM_001180338.3_NCYC1407 | cds-NP_010313.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:500157-501677:- | gene-YDR030C_PE2H3 | rna-NM_001180338.3_PE2H3 | cds-NP_010313.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:499462-500982:- | gene-YDR030C_PE2H4 | rna-NM_001180338.3_PE2H4 | cds-NP_010313.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:501753-503273:- | gene-YDR030C_S288C | rna-NM_001180338.3_S288C | cds-NP_010313.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000065.1:28922-30442:- | gene-YDR030C_SA1 | rna-NM_001180338.3_SA1 | cds-NP_010313.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:501506-503026:- | gene-YDR030C_ThermosaccDry | rna-NM_001180338.3_ThermosaccDry | cds-NP_010313.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:506096-507616:- | gene-YDR030C_VR1 | rna-NM_001180338.3_VR1 | cds-NP_010313.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:499402-500923:- | gene-YDR030C_ZTW1 | rna-NM_001180338.3_ZTW1 | cds-NP_010313.3_ZTW1 | 99.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:503890-505410:- | gene-YDR030C_Sparadoxus | rna-NM_001180338.3_Sparadoxus | cds-NP_010313.3_Sparadoxus | 87.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |