Gene name: RAD24
Reference locus (S288C): YER173W
Gene biotype: protein_coding
Description: Checkpoint protein; involved in the activation of the DNA damage and meiotic pachytene checkpoints; subunit of a clamp loader that loads Rad17p-Mec3p-Ddc1p onto DNA; homolog of human and S. pombe Rad17 protein
Top 10 interactors (score): RFC4 (0.999); MEC1 (0.999); RFC3 (0.999); RFC5 (0.999); RAD17 (0.999); RFC2 (0.999); TEL1 (0.999); ELG1 (0.998); CTF18 (0.995); DDC1 (0.992); CHK1 (0.992); DPB11 (0.992); RAD9 (0.992); RFC1 (0.989); RAD53 (0.988); CSM3 (0.988); MEC3 (0.986); RFA1 (0.983); SGS1 (0.982); TOF1 (0.978)
Homologues (species, bitscore): RAD17 (Homo sapiens, 86.3); Rad17 (Mus musculus, 77.4); rad17 (Danio rerio, 73.9); rad17 (Xenopus tropicalis, 68.6); Rad17 (Drosophila melanogaster, 79.3); ATRAD17 (Arabidopsis thaliana, 84.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:517821-519800:+ | gene-YER173W_AKU4011 | rna-NM_001179063.1_AKU4011 | cds-NP_011100.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:13566-15545:- | gene-YER173W_BG1 | rna-NM_001179063.1_BG1 | cds-NP_011100.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:530564-532543:+ | gene-YER173W_Bruggeman | rna-NM_001179063.1_Bruggeman | cds-NP_011100.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:517152-519131:+ | gene-YER173W_CAT1 | rna-NM_001179063.1_CAT1 | cds-NP_011100.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:517628-519607:+ | gene-YER173W_CBS1585 | rna-NM_001179063.1_CBS1585 | cds-NP_011100.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:527521-529500:+ | gene-YER173W_CBS436 | rna-NM_001179063.1_CBS436 | cds-NP_011100.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:515605-517584:+ | gene-YER173W_CBS6412 | rna-NM_001179063.1_CBS6412 | cds-NP_011100.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:524174-526153:+ | gene-YER173W_CBS6413 | rna-NM_001179063.1_CBS6413 | cds-NP_011100.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:534069-536048:+ | gene-YER173W_CENPK1137D | rna-NM_001179063.1_CENPK1137D | cds-NP_011100.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:523796-525775:+ | gene-YER173W_EthanolRed | rna-NM_001179063.1_EthanolRed | cds-NP_011100.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:524732-526711:+ | gene-YER173W_FaliES1 | rna-NM_001179063.1_FaliES1 | cds-NP_011100.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000169.1:13195-15174:- | gene-YER173W_JAY291 | rna-NM_001179063.1_JAY291 | cds-NP_011100.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:517877-519856:+ | gene-YER173W_MUCL30387 | rna-NM_001179063.1_MUCL30387 | cds-NP_011100.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:520793-522772:+ | gene-YER173W_MUCL30388 | rna-NM_001179063.1_MUCL30388 | cds-NP_011100.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:513586-515565:+ | gene-YER173W_MUCL39482 | rna-NM_001179063.1_MUCL39482 | cds-NP_011100.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:528109-530088:+ | gene-YER173W_MUCL42920 | rna-NM_001179063.1_MUCL42920 | cds-NP_011100.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:536299-538278:+ | gene-YER173W_NCIM3186 | rna-NM_001179063.1_NCIM3186 | cds-NP_011100.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:523041-525020:+ | gene-YER173W_NCYC1407 | rna-NM_001179063.1_NCYC1407 | cds-NP_011100.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:538975-540954:+ | gene-YER173W_PE2H3 | rna-NM_001179063.1_PE2H3 | cds-NP_011100.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:528915-530894:+ | gene-YER173W_PE2H4 | rna-NM_001179063.1_PE2H4 | cds-NP_011100.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:536300-538279:+ | gene-YER173W_S288C | rna-NM_001179063.1_S288C | cds-NP_011100.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000030.1:88452-90431:+ | gene-YER173W_SA1 | rna-NM_001179063.1_SA1 | cds-NP_011100.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:525532-527511:+ | gene-YER173W_ThermosaccDry | rna-NM_001179063.1_ThermosaccDry | cds-NP_011100.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:518818-520797:+ | gene-YER173W_VR1 | rna-NM_001179063.1_VR1 | cds-NP_011100.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000011.1:38378-40357:+ | gene-YER173W_ZTW1 | rna-NM_001179063.1_ZTW1 | cds-NP_011100.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:526761-528734:+ | gene-YER173W_Sparadoxus | rna-NM_001179063.1_Sparadoxus | cds-NP_011100.1_Sparadoxus | 86.9 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |