Gene name: RAD23
Reference locus (S288C): YEL037C
Gene biotype: protein_coding
Description: UV excision repair protein RAD23; Protein with ubiquitin-like N terminus; subunit of Nuclear Excision Repair Factor 2 (NEF2) with Rad4p that binds damaged DNA; enhances protein deglycosylation activity of Png1p; also involved, with Rad4p, in ubiquitylated protein turnover; Rad4p-Rad23p heterodimer binds to promoters of DNA damage response genes to repress their transcription in the absence of DNA damage
Top 10 interactors (score): RAD4 (0.999); UFD2 (0.999); DSK2 (0.999); DDI1 (0.999); RPN10 (0.999); RPN1 (0.999); PNG1 (0.999); UBI4 (0.998); RAD16 (0.997); RAD14 (0.997); RAD7 (0.997); RPT1 (0.996); RPN11 (0.995); RAD2 (0.994); RPT5 (0.992); RAD10 (0.992); CDC48 (0.991); CDC9 (0.989); RPT6 (0.989); RAD34 (0.985)
Homologues (species, bitscore): RAD23B (Homo sapiens, 164.9); Rad23b (Mus musculus, 167.2); rad23b (Danio rerio, 161.0); rad23b (Xenopus tropicalis, 167.2); Rad23 (Drosophila melanogaster, 136.3); rad-23 (Caenorhabditis elegans, 124.0); RAD23A (Arabidopsis thaliana, 157.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:75475-76671:- | gene-YEL037C_AKU4011 | rna-NM_001178852.3_AKU4011 | cds-NP_010877.3_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000075.1:3904-5100:+ | gene-YEL037C_BG1 | rna-NM_001178852.3_BG1 | cds-NP_010877.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:79594-80790:- | gene-YEL037C_Bruggeman | rna-NM_001178852.3_Bruggeman | cds-NP_010877.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:77379-78575:- | gene-YEL037C_CAT1 | rna-NM_001178852.3_CAT1 | cds-NP_010877.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:75417-76613:- | gene-YEL037C_CBS1585 | rna-NM_001178852.3_CBS1585 | cds-NP_010877.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:77020-78216:- | gene-YEL037C_CBS436 | rna-NM_001178852.3_CBS436 | cds-NP_010877.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:75669-76865:- | gene-YEL037C_CBS6412 | rna-NM_001178852.3_CBS6412 | cds-NP_010877.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:80309-81505:- | gene-YEL037C_CBS6413 | rna-NM_001178852.3_CBS6413 | cds-NP_010877.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:79235-80431:- | gene-YEL037C_CENPK1137D | rna-NM_001178852.3_CENPK1137D | cds-NP_010877.3_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:75223-76419:- | gene-YEL037C_EthanolRed | rna-NM_001178852.3_EthanolRed | cds-NP_010877.3_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:75489-76685:- | gene-YEL037C_FaliES1 | rna-NM_001178852.3_FaliES1 | cds-NP_010877.3_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000022.1:3159-4355:+ | gene-YEL037C_JAY291 | rna-NM_001178852.3_JAY291 | cds-NP_010877.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:79662-80858:- | gene-YEL037C_MUCL30387 | rna-NM_001178852.3_MUCL30387 | cds-NP_010877.3_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:75462-76658:- | gene-YEL037C_MUCL30388 | rna-NM_001178852.3_MUCL30388 | cds-NP_010877.3_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:74786-75982:- | gene-YEL037C_MUCL39482 | rna-NM_001178852.3_MUCL39482 | cds-NP_010877.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:79414-80610:- | gene-YEL037C_MUCL42920 | rna-NM_001178852.3_MUCL42920 | cds-NP_010877.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:81406-82602:- | gene-YEL037C_NCIM3186 | rna-NM_001178852.3_NCIM3186 | cds-NP_010877.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:79879-81075:- | gene-YEL037C_NCYC1407 | rna-NM_001178852.3_NCYC1407 | cds-NP_010877.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:83878-85074:- | gene-YEL037C_PE2H3 | rna-NM_001178852.3_PE2H3 | cds-NP_010877.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:79793-80989:- | gene-YEL037C_PE2H4 | rna-NM_001178852.3_PE2H4 | cds-NP_010877.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:81407-82603:- | gene-YEL037C_S288C | rna-NM_001178852.3_S288C | cds-NP_010877.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000053.1:3979-5175:+ | gene-YEL037C_SA1 | rna-NM_001178852.3_SA1 | cds-NP_010877.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:75888-77084:- | gene-YEL037C_ThermosaccDry | rna-NM_001178852.3_ThermosaccDry | cds-NP_010877.3_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:75081-76277:- | gene-YEL037C_VR1 | rna-NM_001178852.3_VR1 | cds-NP_010877.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:74820-76016:- | gene-YEL037C_ZTW1 | rna-NM_001178852.3_ZTW1 | cds-NP_010877.3_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:77428-78630:- | gene-YEL037C_Sparadoxus | rna-NM_001178852.3_Sparadoxus | cds-NP_010877.3_Sparadoxus | 89.5 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |