Gene name: RAD2
Reference locus (S288C): YGR258C
Gene biotype: protein_coding
Description: DNA repair protein RAD2; Single-stranded DNA endonuclease; cleaves single-stranded DNA during nucleotide excision repair to excise damaged DNA; subunit of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPG protein
Top 10 interactors (score): RAD4 (0.999); RAD10 (0.999); RAD3 (0.999); TFB1 (0.999); SSL2 (0.998); RAD14 (0.998); RAD1 (0.998); RAD23 (0.994); SSL1 (0.993); RAD7 (0.993); RAD9 (0.993); RAD16 (0.989); RAD26 (0.988); MSH2 (0.983); MLH1 (0.975); SEN1 (0.974); MSH6 (0.971); TFB2 (0.971); SGS1 (0.965); CAT2 (0.962)
Homologues (species, bitscore): ERCC5 (Homo sapiens, 268.1); Ercc5 (Mus musculus, 298.1); ercc5 (Danio rerio, 307.8); bivm (Xenopus tropicalis, 258.5); Mus201 (Drosophila melanogaster, 250.4); xpg-1 (Caenorhabditis elegans, 121.3); UVH3 (Arabidopsis thaliana, 259.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:973109-976204:- | gene-YGR258C_AKU4011 | rna-NM_001181387.1_AKU4011 | cds-NP_011774.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:253271-256366:- | gene-YGR258C_BG1 | rna-NM_001181387.1_BG1 | cds-NP_011774.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:981621-984716:- | gene-YGR258C_Bruggeman | rna-NM_001181387.1_Bruggeman | cds-NP_011774.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:980564-983659:- | gene-YGR258C_CAT1 | rna-NM_001181387.1_CAT1 | cds-NP_011774.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:975979-979074:- | gene-YGR258C_CBS1585 | rna-NM_001181387.1_CBS1585 | cds-NP_011774.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:979601-982696:- | gene-YGR258C_CBS436 | rna-NM_001181387.1_CBS436 | cds-NP_011774.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:966869-969964:- | gene-YGR258C_CBS6412 | rna-NM_001181387.1_CBS6412 | cds-NP_011774.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:972924-976019:- | gene-YGR258C_CBS6413 | rna-NM_001181387.1_CBS6413 | cds-NP_011774.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:1007352-1010447:- | gene-YGR258C_CENPK1137D | rna-NM_001181387.1_CENPK1137D | cds-NP_011774.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:960952-964047:- | gene-YGR258C_EthanolRed | rna-NM_001181387.1_EthanolRed | cds-NP_011774.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:965758-968853:- | gene-YGR258C_FaliES1 | rna-NM_001181387.1_FaliES1 | cds-NP_011774.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000076.1:61458-64553:+ | gene-YGR258C_JAY291 | rna-NM_001181387.1_JAY291 | cds-NP_011774.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:979362-982457:- | gene-YGR258C_MUCL30387 | rna-NM_001181387.1_MUCL30387 | cds-NP_011774.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:977496-980591:- | gene-YGR258C_MUCL30388 | rna-NM_001181387.1_MUCL30388 | cds-NP_011774.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:971085-974180:- | gene-YGR258C_MUCL39482 | rna-NM_001181387.1_MUCL39482 | cds-NP_011774.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:988950-992045:- | gene-YGR258C_MUCL42920 | rna-NM_001181387.1_MUCL42920 | cds-NP_011774.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:1007671-1010766:- | gene-YGR258C_NCIM3186 | rna-NM_001181387.1_NCIM3186 | cds-NP_011774.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:966714-969809:- | gene-YGR258C_NCYC1407 | rna-NM_001181387.1_NCYC1407 | cds-NP_011774.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:991894-994989:- | gene-YGR258C_PE2H3 | rna-NM_001181387.1_PE2H3 | cds-NP_011774.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:996733-999828:- | gene-YGR258C_PE2H4 | rna-NM_001181387.1_PE2H4 | cds-NP_011774.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:1007671-1010766:- | gene-YGR258C_S288C | rna-NM_001181387.1_S288C | cds-NP_011774.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000063.1:5891-8986:- | gene-YGR258C_SA1 | rna-NM_001181387.1_SA1 | cds-NP_011774.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:986278-989373:- | gene-YGR258C_ThermosaccDry | rna-NM_001181387.1_ThermosaccDry | cds-NP_011774.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1092057-1095152:- | gene-YGR258C_VR1 | rna-NM_001181387.1_VR1 | cds-NP_011774.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:287698-290793:- | gene-YGR258C_ZTW1 | rna-NM_001181387.1_ZTW1 | cds-NP_011774.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:978268-981375:- | gene-YGR258C_Sparadoxus | rna-NM_001181387.1_Sparadoxus | cds-NP_011774.1_Sparadoxus | 87.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |