Gene name: RAD17
Reference locus (S288C): YOR368W
Gene biotype: protein_coding
Description: Checkpoint protein; involved in the activation of the DNA damage and meiotic pachytene checkpoints; with Mec3p and Ddc1p, forms a clamp that is loaded onto partial duplex DNA; homolog of human and S. pombe Rad1 and U. maydis Rec1 proteins
Top 10 interactors (score): DDC1 (0.999); RAD24 (0.999); MEC1 (0.999); MEC3 (0.999); TEL1 (0.996); DPB11 (0.992); RFC4 (0.991); RFC2 (0.988); RAD9 (0.985); RFA1 (0.972); RFA2 (0.969); RAD51 (0.966); RAD53 (0.963); CSM3 (0.962); DUN1 (0.954); RFC3 (0.949); RFC5 (0.942); TOF1 (0.935); MCM2 (0.929); SGS1 (0.926)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:1013443-1014648:+ | gene-YOR368W_AKU4011 | rna-NM_001183788.1_AKU4011 | cds-NP_015013.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000078.1:50604-51809:+ | gene-YOR368W_BG1 | rna-NM_001183788.1_BG1 | cds-NP_015013.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:998250-999455:+ | gene-YOR368W_Bruggeman | rna-NM_001183788.1_Bruggeman | cds-NP_015013.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:998896-1000101:+ | gene-YOR368W_CAT1 | rna-NM_001183788.1_CAT1 | cds-NP_015013.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:997853-999058:+ | gene-YOR368W_CBS1585 | rna-NM_001183788.1_CBS1585 | cds-NP_015013.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:992659-993864:+ | gene-YOR368W_CBS436 | rna-NM_001183788.1_CBS436 | cds-NP_015013.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:227150-228355:+ | gene-YOR368W_CBS6412 | rna-NM_001183788.1_CBS6412 | cds-NP_015013.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:1002126-1003331:+ | gene-YOR368W_CBS6413 | rna-NM_001183788.1_CBS6413 | cds-NP_015013.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:1026665-1027870:+ | gene-YOR368W_CENPK1137D | rna-NM_001183788.1_CENPK1137D | cds-NP_015013.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:242162-243367:+ | gene-YOR368W_EthanolRed | rna-NM_001183788.1_EthanolRed | cds-NP_015013.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:994991-996196:+ | gene-YOR368W_FaliES1 | rna-NM_001183788.1_FaliES1 | cds-NP_015013.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:9480-10685:- | gene-YOR368W_JAY291 | rna-NM_001183788.1_JAY291 | cds-NP_015013.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:1007581-1008786:+ | gene-YOR368W_MUCL30387 | rna-NM_001183788.1_MUCL30387 | cds-NP_015013.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:1015603-1016808:+ | gene-YOR368W_MUCL30388 | rna-NM_001183788.1_MUCL30388 | cds-NP_015013.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:1004388-1005593:+ | gene-YOR368W_MUCL39482 | rna-NM_001183788.1_MUCL39482 | cds-NP_015013.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:1012000-1013205:+ | gene-YOR368W_MUCL42920 | rna-NM_001183788.1_MUCL42920 | cds-NP_015013.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:1026732-1027937:+ | gene-YOR368W_NCIM3186 | rna-NM_001183788.1_NCIM3186 | cds-NP_015013.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:1005396-1006601:+ | gene-YOR368W_NCYC1407 | rna-NM_001183788.1_NCYC1407 | cds-NP_015013.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:1000663-1001868:+ | gene-YOR368W_PE2H3 | rna-NM_001183788.1_PE2H3 | cds-NP_015013.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:1017014-1018219:+ | gene-YOR368W_PE2H4 | rna-NM_001183788.1_PE2H4 | cds-NP_015013.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:1026843-1028048:+ | gene-YOR368W_S288C | rna-NM_001183788.1_S288C | cds-NP_015013.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:131377-132582:+ | gene-YOR368W_SA1 | rna-NM_001183788.1_SA1 | cds-NP_015013.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:994161-995366:+ | gene-YOR368W_ThermosaccDry | rna-NM_001183788.1_ThermosaccDry | cds-NP_015013.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:1055645-1056850:+ | gene-YOR368W_VR1 | rna-NM_001183788.1_VR1 | cds-NP_015013.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:726882-728087:+ | gene-YOR368W_ZTW1 | rna-NM_001183788.1_ZTW1 | cds-NP_015013.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:1000915-1002120:+ | gene-YOR368W_Sparadoxus | rna-NM_001183788.1_Sparadoxus | cds-NP_015013.1_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |