Gene name: RAD16
Reference locus (S288C): YBR114W
Gene biotype: protein_coding
Description: Nucleotide excision repair (NER) protein; binds damaged DNA during NER; binds DNA in an ATP-dependent manner (with Rad7p) during NER; required for NER of non-transcribed chromatin; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex
Top 10 interactors (score): RAD7 (0.999); RAD23 (0.997); RAD4 (0.995); RAD2 (0.989); RAD3 (0.982); RAD14 (0.982); SSL2 (0.979); ELC1 (0.977); ABF1 (0.974); CUL3 (0.971); RAD10 (0.955); RAD1 (0.947); SSL1 (0.937); TFB1 (0.935); MSH6 (0.93); HRT1 (0.911); RAD26 (0.9); SHU1 (0.9); SHU2 (0.9); CSM2 (0.9)
Homologues (species, bitscore): HLTF (Homo sapiens, 287.3); Hltf (Mus musculus, 294.7); hltf (Danio rerio, 296.2); HLTF (Xenopus tropicalis, 321.6); lds (Drosophila melanogaster, 204.1); F54E12.2 (Caenorhabditis elegans, 213.4); AT1G05120 (Arabidopsis thaliana, 529.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:449646-452018:+ | gene-YBR114W_AKU4011 | rna-NM_001178462.1_AKU4011 | cds-NP_009672.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:440680-443052:+ | gene-YBR114W_BG1 | rna-NM_001178462.1_BG1 | cds-NP_009672.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:451419-453791:+ | gene-YBR114W_Bruggeman | rna-NM_001178462.1_Bruggeman | cds-NP_009672.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:454640-457012:+ | gene-YBR114W_CAT1 | rna-NM_001178462.1_CAT1 | cds-NP_009672.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:441929-444301:+ | gene-YBR114W_CBS1585 | rna-NM_001178462.1_CBS1585 | cds-NP_009672.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:449998-452370:+ | gene-YBR114W_CBS436 | rna-NM_001178462.1_CBS436 | cds-NP_009672.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:540158-542530:+ | gene-YBR114W_CBS6412 | rna-NM_001178462.1_CBS6412 | cds-NP_009672.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:447058-449430:+ | gene-YBR114W_CBS6413 | rna-NM_001178462.1_CBS6413 | cds-NP_009672.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:459146-461518:+ | gene-YBR114W_CENPK1137D | rna-NM_001178462.1_CENPK1137D | cds-NP_009672.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:576398-578770:+ | gene-YBR114W_EthanolRed | rna-NM_001178462.1_EthanolRed | cds-NP_009672.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:465681-468053:+ | gene-YBR114W_FaliES1 | rna-NM_001178462.1_FaliES1 | cds-NP_009672.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000312.1:36583-38955:+ | gene-YBR114W_JAY291 | rna-NM_001178462.1_JAY291 | cds-NP_009672.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:454072-456444:+ | gene-YBR114W_MUCL30387 | rna-NM_001178462.1_MUCL30387 | cds-NP_009672.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:452680-455052:+ | gene-YBR114W_MUCL30388 | rna-NM_001178462.1_MUCL30388 | cds-NP_009672.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:440072-442444:+ | gene-YBR114W_MUCL39482 | rna-NM_001178462.1_MUCL39482 | cds-NP_009672.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:449729-452101:+ | gene-YBR114W_MUCL42920 | rna-NM_001178462.1_MUCL42920 | cds-NP_009672.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:467045-469417:+ | gene-YBR114W_NCIM3186 | rna-NM_001178462.1_NCIM3186 | cds-NP_009672.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:442850-445222:+ | gene-YBR114W_NCYC1407 | rna-NM_001178462.1_NCYC1407 | cds-NP_009672.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:455428-457800:+ | gene-YBR114W_PE2H3 | rna-NM_001178462.1_PE2H3 | cds-NP_009672.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:453104-455476:+ | gene-YBR114W_PE2H4 | rna-NM_001178462.1_PE2H4 | cds-NP_009672.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:467248-469620:+ | gene-YBR114W_S288C | rna-NM_001178462.1_S288C | cds-NP_009672.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:8134-10506:- | gene-YBR114W_SA1 | rna-NM_001178462.1_SA1 | cds-NP_009672.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:464688-467060:+ | gene-YBR114W_ThermosaccDry | rna-NM_001178462.1_ThermosaccDry | cds-NP_009672.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:446686-449058:+ | gene-YBR114W_VR1 | rna-NM_001178462.1_VR1 | cds-NP_009672.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:440338-442710:+ | gene-YBR114W_ZTW1 | rna-NM_001178462.1_ZTW1 | cds-NP_009672.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:477512-479881:+ | gene-YBR114W_Sparadoxus | rna-NM_001178462.1_Sparadoxus | cds-NP_009672.1_Sparadoxus | 91.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |